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jlec 10/07/03 13:32:41 |
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Added: phaser-2.1.4.ebuild metadata.xml ChangeLog |
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Log: |
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Initial addition |
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(Portage version: 2.2_rc67/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.1 sci-chemistry/phaser/phaser-2.1.4.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/phaser/phaser-2.1.4.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/phaser/phaser-2.1.4.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: phaser-2.1.4.ebuild |
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=================================================================== |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/phaser/phaser-2.1.4.ebuild,v 1.1 2010/07/03 13:32:41 jlec Exp $ |
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EAPI="3" |
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|
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PYTHON_DEPEND="2" |
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|
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inherit base flag-o-matic python |
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|
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CCP4VER="6.1.13" |
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|
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DESCRIPTION="A program for phasing macromolecular crystal structures" |
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HOMEPAGE="http://www-structmed.cimr.cam.ac.uk/phaser" |
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SRC_URI="ftp://ftp.ccp4.ac.uk/ccp4/${CCP4VER}/ccp4-${CCP4VER}-${PN}-cctbx-src.tar.gz" |
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|
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LICENSE="|| ( phaser phaser-com ccp4 )" |
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SLOT="0" |
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KEYWORDS="~amd64 ~x86" |
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IUSE="openmp" |
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RDEPEND="" |
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DEPEND="${RDEPEND} |
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app-shells/tcsh" |
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|
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S="${WORKDIR}"/ccp4-${CCP4VER} |
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|
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PATCHES=( |
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"${FILESDIR}"/phaser-2.1.4-chmod.patch |
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"${FILESDIR}"/phaser-2.1.4-ldflags.patch |
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) |
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|
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pkg_setup() { |
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python_set_active_version 2 |
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} |
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src_prepare() { |
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base_src_prepare |
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|
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use openmp && append-flags -fopenmp |
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for i in ${CXXFLAGS}; do |
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OPTS="${OPTS} \"${i}\"," |
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done |
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OPTS=${OPTS%,} |
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|
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sed -i \ |
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-e "s:opts = \[.*\]$:opts = \[${OPTS}\]:g" \ |
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"${S}"/lib/cctbx/cctbx_sources/libtbx/SConscript || die |
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|
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for i in ${LDFLAGS}; do |
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OPTSLD="${OPTSLD} \"${i}\"," |
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done |
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|
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sed -i \ |
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-e "s:env_etc.shlinkflags .* \"-shared\":env_etc.shlinkflags = \[ ${OPTSLD} \"-shared\"\]:g" \ |
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-e "s:\[\"-static:\[${OPTSLD} \"-static:g" \ |
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"${S}"/lib/cctbx/cctbx_sources/libtbx/SConscript || die |
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|
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} |
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src_configure() { |
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local compiler |
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local mtype |
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local mversion |
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local nproc |
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# Valid compilers are win32_cl, sunos_CC, unix_gcc, unix_ecc, |
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# unix_icc, unix_icpc, tru64_cxx, hp_ux11_aCC, irix_CC, |
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# darwin_c++, darwin_gcc. The build systems seems to prepend |
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# unix_ all by itself. Can this be derived from $(tc-getCC)? |
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compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)') |
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|
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# Breaks cross compilation. |
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mtype=$(src/${PN}/bin/machine_type) |
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mversion=$(src/${PN}/bin/machine_version) |
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einfo "Creating build directory" |
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mkdir build |
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cd build |
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ln -sf "${S}/lib/cctbx/cctbx_sources/scons" scons |
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ln -sf "${S}/lib/cctbx/cctbx_sources/libtbx" libtbx |
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|
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einfo "Configuring phaser components" |
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$(PYTHON) "libtbx/configure.py" \ |
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--build=release \ |
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--compiler=${compiler} \ |
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--repository="${S}"/src/${PN}/source \ |
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--repository="${S}"/lib/cctbx/cctbx_sources \ |
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--static_libraries \ |
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ccp4io="${S}" \ |
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mmtbx \ |
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phaser || die "configure.py failed" |
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} |
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src_compile() { |
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nproc=`echo "-j1 ${MAKEOPTS}" \ |
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| sed -e "s/.*\(-j\s*\|--jobs=\)\([0-9]\+\).*/\2/"` |
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cd build |
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einfo "Setting up build environment" |
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source setpaths.sh |
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einfo "Compiling phaser components" |
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libtbx.scons -j ${nproc} || die "libtbx.scons failed" |
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} |
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src_install() { |
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dobin build/exe/phaser || die |
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cat >> "${T}"/53${PN} <<- EOF |
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PHASER="${EPREFIX}/usr/bin" |
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PHASER_ENVIRONMENT="1" |
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PHASER_MTYPE="${mtype}" |
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PHASER_MVERSION="${mversion}" |
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PHASER_VERSION="${PV}" |
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EOF |
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doenvd "${T}"/53${PN} || die |
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} |
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1.1 sci-chemistry/phaser/metadata.xml |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/phaser/metadata.xml?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/phaser/metadata.xml?rev=1.1&content-type=text/plain |
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Index: metadata.xml |
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=================================================================== |
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<?xml version="1.0" encoding="UTF-8"?> |
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<pkgmetadata> |
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<herd>sci-chemistry</herd> |
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<maintainer> |
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<email>jlec@g.o</email> |
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<description>ccp4 maintainer</description> |
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</maintainer> |
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</pkgmetadata> |
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1.1 sci-chemistry/phaser/ChangeLog |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/phaser/ChangeLog?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/phaser/ChangeLog?rev=1.1&content-type=text/plain |
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Index: ChangeLog |
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=================================================================== |
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# ChangeLog for sci-chemistry/phaser |
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# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/phaser/ChangeLog,v 1.1 2010/07/03 13:32:41 jlec Exp $ |
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*phaser-2.1.4 (03 Jul 2010) |
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03 Jul 2010; Justin Lecher <jlec@g.o> +phaser-2.1.4.ebuild, |
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+files/phaser-2.1.4-chmod.patch, +metadata.xml: |
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Initial addition |