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commit: 53b2b237392972cb1f15086dbf5145004acf38da |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Sat Jul 30 00:10:03 2016 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Sat Jul 30 00:10:03 2016 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=53b2b237 |
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|
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sci-biology/gbench: version bump; run configure; does not compile |
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|
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Package-Manager: portage-2.3.0 |
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|
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.../{gbench-2.3.2.ebuild => gbench-2.10.7.ebuild} | 22 +++++++++++++++++----- |
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1 file changed, 17 insertions(+), 5 deletions(-) |
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|
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diff --git a/sci-biology/gbench/gbench-2.3.2.ebuild b/sci-biology/gbench/gbench-2.10.7.ebuild |
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similarity index 57% |
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rename from sci-biology/gbench/gbench-2.3.2.ebuild |
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rename to sci-biology/gbench/gbench-2.10.7.ebuild |
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index abee15a..d205c87 100644 |
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--- a/sci-biology/gbench/gbench-2.3.2.ebuild |
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+++ b/sci-biology/gbench/gbench-2.10.7.ebuild |
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@@ -1,4 +1,4 @@ |
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-# Copyright 1999-2015 Gentoo Foundation |
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+# Copyright 1999-2016 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Id$ |
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|
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@@ -10,7 +10,7 @@ inherit python-single-r1 wxwidgets |
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|
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DESCRIPTION="View and analyze genome sequences" |
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HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/" |
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-SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-2.3.2/gbench-src-"${PV}".tgz" |
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+SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-"${PV}"/gbench-src-"${PV}".tgz" |
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|
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LICENSE="public-domain" |
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SLOT="0" |
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@@ -34,13 +34,13 @@ RDEPEND="${PYTHON_DEPS} |
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dev-util/cppunit |
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media-libs/freetype |
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media-libs/giflib |
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- media-libs/glew |
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+ media-libs/glew:= |
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media-libs/tiff:0= |
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net-libs/gnutls |
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sci-libs/hdf5 |
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sys-fs/fuse |
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sys-libs/db:* |
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- virtual/glut |
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+ virtual/glu |
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virtual/opengl |
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x11-libs/fltk |
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x11-libs/wxGTK:* |
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@@ -59,4 +59,16 @@ RDEPEND="${PYTHON_DEPS} |
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" |
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DEPEND="${RDEPEND}" |
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|
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-# ensure in src_compile no --mandir=/usr/share/man is passed to configure, use the ebuild logic from ncbi-tools++ |
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+# recycle ebuild logic from ncbi-tools++ |
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+ |
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+S="${WORKDIR}"/gbench-src-"${PV}" |
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+ |
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+src_configure(){ |
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+ # configure: error: --mandir=/usr/share/man: unknown option; use --help to show usage |
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+ # configure: error: --infodir=/usr/share/info: unknown option; use --help to show usage |
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+ # configure: error: --datadir=/usr/share: unknown option; use --help to show usage |
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+ # configure: error: --sysconfdir=/etc: unknown option; use --help to show usage |
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+ # configure: error: --localstatedir=/var/lib: unknown option; use --help to show usage |
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+ ./configure --prefix="${DESTDIR}"/"${EPREFIX}/usr" --libdir="${EPREFIX}/usr/$(get_libdir)" CC="$(tc-getCC)" \ |
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+ CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" || die |
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+} |
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