| 1 |
weaver 09/04/29 01:49:57 |
| 2 |
|
| 3 |
Modified: metadata.xml ChangeLog |
| 4 |
Added: clustalx-2.0.11.ebuild |
| 5 |
Removed: clustalx-2.0.9.ebuild |
| 6 |
Log: |
| 7 |
Version bump, fix bug 261278 |
| 8 |
(Portage version: 2.2_rc30/cvs/Linux x86_64) |
| 9 |
|
| 10 |
Revision Changes Path |
| 11 |
1.4 sci-biology/clustalx/metadata.xml |
| 12 |
|
| 13 |
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/clustalx/metadata.xml?rev=1.4&view=markup |
| 14 |
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/clustalx/metadata.xml?rev=1.4&content-type=text/plain |
| 15 |
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/clustalx/metadata.xml?r1=1.3&r2=1.4 |
| 16 |
|
| 17 |
Index: metadata.xml |
| 18 |
=================================================================== |
| 19 |
RCS file: /var/cvsroot/gentoo-x86/sci-biology/clustalx/metadata.xml,v |
| 20 |
retrieving revision 1.3 |
| 21 |
retrieving revision 1.4 |
| 22 |
diff -u -r1.3 -r1.4 |
| 23 |
--- metadata.xml 24 Mar 2009 21:19:09 -0000 1.3 |
| 24 |
+++ metadata.xml 29 Apr 2009 01:49:57 -0000 1.4 |
| 25 |
@@ -1,10 +1,9 @@ |
| 26 |
<?xml version="1.0" encoding="UTF-8"?> |
| 27 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 28 |
<pkgmetadata> |
| 29 |
+ <maintainer> |
| 30 |
+ <email>weaver@g.o</email> |
| 31 |
+ <name>Andrey Kislyuk</name> |
| 32 |
+ </maintainer> |
| 33 |
<herd>sci-biology</herd> |
| 34 |
- <longdescription> |
| 35 |
- Clustal X is a graphical interface for the ClustalW multiple sequence |
| 36 |
- alignment program. It provides an integrated environment for performing |
| 37 |
- multiple sequence and profile alignments and analysing the results. |
| 38 |
- </longdescription> |
| 39 |
</pkgmetadata> |
| 40 |
|
| 41 |
|
| 42 |
|
| 43 |
1.19 sci-biology/clustalx/ChangeLog |
| 44 |
|
| 45 |
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/clustalx/ChangeLog?rev=1.19&view=markup |
| 46 |
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/clustalx/ChangeLog?rev=1.19&content-type=text/plain |
| 47 |
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/clustalx/ChangeLog?r1=1.18&r2=1.19 |
| 48 |
|
| 49 |
Index: ChangeLog |
| 50 |
=================================================================== |
| 51 |
RCS file: /var/cvsroot/gentoo-x86/sci-biology/clustalx/ChangeLog,v |
| 52 |
retrieving revision 1.18 |
| 53 |
retrieving revision 1.19 |
| 54 |
diff -u -r1.18 -r1.19 |
| 55 |
--- ChangeLog 24 Mar 2009 21:19:09 -0000 1.18 |
| 56 |
+++ ChangeLog 29 Apr 2009 01:49:57 -0000 1.19 |
| 57 |
@@ -1,6 +1,13 @@ |
| 58 |
# ChangeLog for sci-biology/clustalx |
| 59 |
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
| 60 |
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/ChangeLog,v 1.18 2009/03/24 21:19:09 ribosome Exp $ |
| 61 |
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/ChangeLog,v 1.19 2009/04/29 01:49:57 weaver Exp $ |
| 62 |
+ |
| 63 |
+*clustalx-2.0.11 (28 Apr 2009) |
| 64 |
+ |
| 65 |
+ 28 Apr 2009; Andrey Kislyuk <weaver@g.o> |
| 66 |
+ -files/clustalx-2.0.9-gcc4.3.patch, metadata.xml, -clustalx-2.0.9.ebuild, |
| 67 |
+ +clustalx-2.0.11.ebuild: |
| 68 |
+ Version bump, fix bug 261278, remove old, assume maintainership |
| 69 |
|
| 70 |
24 Mar 2009; Olivier Fisette <ribosome@g.o> metadata.xml: |
| 71 |
Giving up maintainership of this package. |
| 72 |
|
| 73 |
|
| 74 |
|
| 75 |
1.1 sci-biology/clustalx/clustalx-2.0.11.ebuild |
| 76 |
|
| 77 |
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/clustalx/clustalx-2.0.11.ebuild?rev=1.1&view=markup |
| 78 |
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/clustalx/clustalx-2.0.11.ebuild?rev=1.1&content-type=text/plain |
| 79 |
|
| 80 |
Index: clustalx-2.0.11.ebuild |
| 81 |
=================================================================== |
| 82 |
# Copyright 1999-2009 Gentoo Foundation |
| 83 |
# Distributed under the terms of the GNU General Public License v2 |
| 84 |
# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/clustalx-2.0.11.ebuild,v 1.1 2009/04/29 01:49:57 weaver Exp $ |
| 85 |
|
| 86 |
EAPI=2 |
| 87 |
|
| 88 |
inherit qt4 eutils |
| 89 |
|
| 90 |
DESCRIPTION="Graphical interface for the ClustalW multiple alignment program" |
| 91 |
HOMEPAGE="http://www.ebi.ac.uk/tools/clustalw2/" |
| 92 |
SRC_URI="http://www.clustal.org/download/current/${P}.tar.gz" |
| 93 |
|
| 94 |
LICENSE="clustalw" |
| 95 |
SLOT="0" |
| 96 |
KEYWORDS="~x86 ~amd64" |
| 97 |
IUSE="" |
| 98 |
|
| 99 |
DEPEND="x11-libs/qt-gui:4" |
| 100 |
|
| 101 |
RDEPEND=">=sci-biology/clustalw-2.0.11" |
| 102 |
|
| 103 |
src_prepare() { |
| 104 |
sed -e "s|colprot.xml|/usr/share/${PN}/colprot.xml|" \ |
| 105 |
-e "s|coldna.xml|/usr/share/${PN}/coldna.xml|" \ |
| 106 |
-e "s|colprint.xml|/usr/share/${PN}/colprint.xml|" \ |
| 107 |
-i ClustalQtParams.h || \ |
| 108 |
die "Failed to patch shared files location." |
| 109 |
sed -e "s|clustalx.hlp|/usr/share/${PN}/clustalx.hlp|" \ |
| 110 |
-i HelpDisplayWidget.cpp || \ |
| 111 |
die "Failed to patch help file location." |
| 112 |
rm -f moc*.{cpp,o} || die |
| 113 |
} |
| 114 |
|
| 115 |
src_compile() { |
| 116 |
eqmake4 |
| 117 |
emake || die "Compilation failed." |
| 118 |
} |
| 119 |
|
| 120 |
src_install() { |
| 121 |
dobin clustalx || die "Failed to install program." |
| 122 |
insinto "/usr/share/${PN}" |
| 123 |
doins colprot.xml coldna.xml colprint.xml clustalx.hlp || \ |
| 124 |
die "Failed to install shared files." |
| 125 |
make_desktop_entry ${PN} ClustalX "" "Application;Science" |
| 126 |
} |
Archives