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commit: 45f4ecf6f9d5e9c4e699ea84a7b4b8bb6c9740d6 |
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Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> |
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AuthorDate: Thu Dec 31 10:34:09 2020 +0000 |
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Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc> |
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CommitDate: Thu Dec 31 12:04:10 2020 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=45f4ecf6 |
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|
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sci-biology/pybedtools: drop py3.6 |
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|
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Package-Manager: Portage-3.0.12, Repoman-3.0.2 |
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Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> |
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Closes: https://github.com/gentoo/sci/pull/1012 |
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Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc> |
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|
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sci-biology/pybedtools/pybedtools-0.8.0.ebuild | 32 +++++++++++--------------- |
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1 file changed, 13 insertions(+), 19 deletions(-) |
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|
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diff --git a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild b/sci-biology/pybedtools/pybedtools-0.8.0.ebuild |
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index a91de8cca..6d391b0a8 100644 |
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--- a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild |
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+++ b/sci-biology/pybedtools/pybedtools-0.8.0.ebuild |
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@@ -3,7 +3,7 @@ |
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|
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EAPI=7 |
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|
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-PYTHON_COMPAT=( python3_{6..9} ) |
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+PYTHON_COMPAT=( python3_{7..9} ) |
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|
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inherit distutils-r1 |
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|
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@@ -13,8 +13,8 @@ SRC_URI="https://github.com/daler/pybedtools/archive/v${PV}.tar.gz -> ${P}.tar.g |
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|
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LICENSE="MIT" |
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SLOT="0" |
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-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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-IUSE="doc minimal" |
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+KEYWORDS="~amd64 ~x86" |
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+IUSE="minimal" |
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RESTRICT="test" |
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# Tests reported to fail on Gentoo: |
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# https://github.com/daler/pybedtools/issues/329 |
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@@ -23,29 +23,23 @@ RESTRICT="test" |
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RDEPEND=" |
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sci-biology/bedtools |
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sci-biology/pysam |
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- dev-python/numpy |
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- dev-python/pandas |
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- !minimal? ( sci-libs/htslib ) |
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- doc? ( dev-python/sphinx )" |
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+ dev-python/numpy[${PYTHON_USEDEP}] |
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+ dev-python/pandas[${PYTHON_USEDEP}] |
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+ !minimal? ( sci-libs/htslib )" |
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# optional-requirements.txt also lists: |
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# ucsc-bigwigtobedgraph |
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# ucsc-bedgraphtobigwig |
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# ucsc-wigtobigwig |
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-DEPEND="${RDEPEND} |
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+BDEPEND="${RDEPEND} |
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dev-python/cython[${PYTHON_USEDEP}]" |
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|
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+# ToDo: fix docs building |
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+# ModuleNotFoundError: No module named 'pybedtools.cbedtools' |
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+# even if pybedtools is installed |
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+#distutils_enable_sphinx docs/source |
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+distutils_enable_tests pytest |
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+ |
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src_compile(){ |
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python setup.py cythonize |
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distutils-r1_src_compile |
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- use doc && cd docs && emake html |
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-} |
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- |
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-src_install(){ |
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- distutils-r1_src_install |
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- if use doc; then |
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- insinto /usr/share/doc/"${PN}" |
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- doins -r docs/build/html |
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- fi |
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} |
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- |
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-distutils_enable_tests pytest |
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