[gentoo-commits] proj/sci:ccp4 commit in: sci-chemistry/pointless/

[Justin Lecher]

commit:     49debc8e7a5307a0d836dc7a8d6bcbfd926cb1d1
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jun  1 16:44:42 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jun  1 16:44:42 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=49debc8e

sci-chemistry/pointless: Version Bump

Package-Manager: portage-2.2.0_alpha177

---
 sci-chemistry/pointless/ChangeLog              | 169 +++++++++++++++++++++++++
 sci-chemistry/pointless/metadata.xml           |   8 ++
 sci-chemistry/pointless/pointless-1.8.2.ebuild |  51 ++++++++
 3 files changed, 228 insertions(+)

diff --git a/sci-chemistry/pointless/ChangeLog b/sci-chemistry/pointless/ChangeLog
new file mode 100644
index 0000000..0f78ea0
--- /dev/null
+++ b/sci-chemistry/pointless/ChangeLog
@@ -0,0 +1,169 @@
+# ChangeLog for sci-chemistry/pointless
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pointless/ChangeLog,v 1.34 2012/10/19 15:19:34 jlec Exp $
+
+*pointless-1.8.2 (01 Jun 2013)
+
+  01 Jun 2013; Justin Lecher <jlec@g.o> +pointless-1.8.2.ebuild,
+  +metadata.xml:
+  Version Bump
+
+  19 Oct 2012; Justin Lecher <jlec@g.o> +pointless-1.6.14.ebuild,
+  -pointless-1.6.15.ebuild:
+  Drop broken version
+
+*pointless-1.6.15 (19 Oct 2012)
+
+  19 Oct 2012; Justin Lecher <jlec@g.o> pointless-1.6.2.ebuild,
+  -pointless-1.6.4.ebuild, -pointless-1.6.5.ebuild, -pointless-1.6.11.ebuild,
+  -pointless-1.6.14.ebuild, +pointless-1.6.15.ebuild:
+  Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
+  updated fortran-2.eclass
+
+  14 Apr 2012; Andreas Schuerch <nativemad@g.o> pointless-1.6.2.ebuild:
+  x86 stable, see bug 375917, thanks all.
+
+*pointless-1.6.14 (28 Feb 2012)
+
+  28 Feb 2012; Justin Lecher <jlec@g.o> +pointless-1.6.14.ebuild:
+  Version Bump
+
+*pointless-1.6.11 (27 Dec 2011)
+
+  27 Dec 2011; Justin Lecher <jlec@g.o> +pointless-1.6.11.ebuild:
+  Version Bump
+
+  16 Oct 2011; Samuli Suominen <ssuominen@g.o> pointless-1.6.2.ebuild:
+  amd64 restable
+
+  08 Oct 2011; Samuli Suominen <ssuominen@g.o> pointless-1.6.2.ebuild:
+  Revert back to ~arch for security and libpng porting.
+
+  06 Oct 2011; Tony Vroon <chainsaw@g.o> pointless-1.6.2.ebuild:
+  Marked stable on AMD64 based on arch testing by Agostino "ago" Sarubbo in bug
+  #351753.
+
+*pointless-1.6.5 (04 Oct 2011)
+
+  04 Oct 2011; Justin Lecher <jlec@g.o> +pointless-1.6.5.ebuild:
+  Version Bump
+
+*pointless-1.6.4 (31 Aug 2011)
+
+  31 Aug 2011; Justin Lecher <jlec@g.o> +pointless-1.6.4.ebuild:
+  Version Bump
+
+  28 Aug 2011; Justin Lecher <jlec@g.o> pointless-1.6.2.ebuild:
+  Narrowed dep on ccp4-libs to 6.1.3-r10, #376251
+
+  15 Aug 2011; Justin Lecher <jlec@g.o> pointless-1.6.2.ebuild:
+  Removed unneeded USE=test
+
+  15 Aug 2011; Kacper Kowalik <xarthisius@g.o> pointless-1.6.2.ebuild:
+  Marked ~ppc for sci-chemistry/xia2
+
+*pointless-1.6.2 (14 Aug 2011)
+
+  14 Aug 2011; Justin Lecher <jlec@g.o> -pointless-1.5.12.ebuild,
+  -pointless-1.5.14.ebuild, -pointless-1.5.21.ebuild, +pointless-1.6.2.ebuild,
+  metadata.xml:
+  Version Bump and removed broken versions
+  https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1107&L=CCP4BB&F=&S=&P=29208
+  5
+
+  21 Jun 2011; Justin Lecher <jlec@g.o> pointless-1.5.14.ebuild,
+  pointless-1.5.21.ebuild:
+  Add dependency on virtual/fortran
+
+  21 Jun 2011; Justin Lecher <jlec@g.o> pointless-1.5.12.ebuild:
+  Add dependency on virtual/fortran
+
+  21 Jun 2011; Justin Lecher <jlec@g.o> pointless-1.5.12.ebuild,
+  pointless-1.5.14.ebuild, pointless-1.5.21.ebuild:
+  Added fortran-2.eclass support
+
+*pointless-1.5.21 (12 May 2011)
+
+  12 May 2011; Justin Lecher <jlec@g.o> -pointless-1.5.19.ebuild,
+  +pointless-1.5.21.ebuild:
+  1.5.19 is seriously broken, bump to 21: "specifically, files written in a
+  point group of lower symmetry than the apparent lattice group were not
+  sorted, but were flagged as sorted in the file. This leads to apparent
+  completeness in Scala > 100% and failure to merge properly"
+
+*pointless-1.5.19 (10 Apr 2011)
+
+  10 Apr 2011; Justin Lecher <jlec@g.o> +pointless-1.5.19.ebuild:
+  Version BUmp
+
+  16 Jan 2011; Kacper Kowalik <xarthisius@g.o>
+  pointless-1.5.12.ebuild:
+  marked ~ppc wrt #303931
+
+  15 Jan 2011; Justin Lecher <jlec@g.o> -pointless-1.4.9.ebuild,
+  -pointless-1.5.7.ebuild, -pointless-1.5.9.ebuild, -pointless-1.5.10.ebuild:
+  Keyworded for ~-linux, tested by me, removed old
+
+*pointless-1.5.14 (15 Jan 2011)
+
+  15 Jan 2011; Justin Lecher <jlec@g.o> +pointless-1.5.14.ebuild:
+  Version Bump, fixed missing deps
+
+*pointless-1.5.12 (15 Dec 2010)
+
+  15 Dec 2010; Justin Lecher <jlec@g.o> +pointless-1.5.12.ebuild:
+  Version Bump, fix for new cctbx stuff
+
+*pointless-1.5.10 (23 Oct 2010)
+
+  23 Oct 2010; Justin Lecher <jlec@g.o> +pointless-1.5.10.ebuild:
+  Version Bump
+
+  25 Sep 2010; Justin Lecher <jlec@g.o> pointless-1.5.9.ebuild:
+  reverted Changes for include paths
+
+  20 Sep 2010; Justin Lecher <jlec@g.o> pointless-1.4.9.ebuild,
+  pointless-1.5.7.ebuild, pointless-1.5.9.ebuild:
+  Fix cctbx version
+
+*pointless-1.5.9 (12 Sep 2010)
+
+  12 Sep 2010; Justin Lecher <jlec@g.o> -pointless-1.5.1.ebuild,
+  -pointless-1.5.2.ebuild, -pointless-1.5.3.ebuild, +pointless-1.5.9.ebuild:
+  Version Bump, cleaned old
+
+*pointless-1.5.7 (08 Jul 2010)
+
+  08 Jul 2010; Justin Lecher <jlec@g.o> +pointless-1.5.7.ebuild:
+  Version Bump
+
+*pointless-1.5.3 (16 Jun 2010)
+
+  16 Jun 2010; Justin Lecher <jlec@g.o> pointless-1.4.9.ebuild,
+  pointless-1.5.1.ebuild, pointless-1.5.2.ebuild, +pointless-1.5.3.ebuild:
+  Version Bump and keyworded for *-linux
+
+*pointless-1.5.2 (29 May 2010)
+
+  29 May 2010; Justin Lecher <jlec@g.o> -pointless-1.4.8.ebuild,
+  +pointless-1.5.2.ebuild:
+  Version Bump
+
+*pointless-1.5.1 (16 May 2010)
+
+  16 May 2010; Justin Lecher <jlec@g.o> +files/1.5.1-gcc4.4.patch,
+  +pointless-1.5.1.ebuild:
+  Version Bump
+
+*pointless-1.4.9 (26 Feb 2010)
+
+  26 Feb 2010; Justin Lecher <jlec@g.o>
+  +pointless-1.4.9.ebuild:
+  Version Bump
+
+*pointless-1.4.8 (06 Feb 2010)
+
+  06 Feb 2010; Justin Lecher <jlec@g.o>
+  +pointless-1.4.8.ebuild, +metadata.xml:
+  Splitted pointless from ccp4
+

diff --git a/sci-chemistry/pointless/metadata.xml b/sci-chemistry/pointless/metadata.xml
new file mode 100644
index 0000000..5ef07a3
--- /dev/null
+++ b/sci-chemistry/pointless/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci</herd>
+  <maintainer>
+    <email>jlec@g.o</email>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-chemistry/pointless/pointless-1.8.2.ebuild b/sci-chemistry/pointless/pointless-1.8.2.ebuild
new file mode 100644
index 0000000..814b28d
--- /dev/null
+++ b/sci-chemistry/pointless/pointless-1.8.2.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pointless/pointless-1.6.14.ebuild,v 1.3 2012/10/19 15:19:34 jlec Exp $
+
+EAPI=5
+
+inherit eutils multilib toolchain-funcs
+
+DESCRIPTION="Scores crystallographic Laue and space groups"
+HOMEPAGE="ftp://ftp.mrc-lmb.cam.ac.uk/pub/pre/pointless.html"
+SRC_URI="ftp://ftp.mrc-lmb.cam.ac.uk/pub/pre/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="ccp4"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+CDEPEND="
+	sci-libs/clipper
+	sci-libs/fftw:2.1
+	sci-libs/libccp4[fortran]
+	sci-libs/mmdb
+	>=sci-libs/cctbx-2013"
+DEPEND="${CDEPEND}
+	virtual/pkgconfig"
+RDEPEND="${CDEPEND}"
+
+S="${WORKDIR}"
+
+src_compile() {
+	emake  \
+		-f Makefile.make \
+		CC=$(tc-getCC) \
+		CXX=$(tc-getCXX) \
+		CFLAGS="${CFLAGS}" \
+		CXXFLAGS="${CXXFLAGS}" \
+		LFLAGS="${LDFLAGS}" \
+		CLIB="${EPREFIX}/usr/$(get_libdir)" \
+		CCTBX_VERSION=2013 \
+		ICCP4="$(pkg-config --cflags libccp4c libccp4f mmdb)" \
+		ICLPR="$(pkg-config --cflags clipper)" \
+		ITBX="$(pkg-config --cflags cctbx)" \
+		LCCP4="$(pkg-config --libs libccp4c libccp4f mmdb)"\
+		LCLPR="$(pkg-config --libs clipper)" \
+		LTBX="$(pkg-config --libs cctbx)" \
+		SLIB=""
+}
+
+src_install() {
+	dobin pointless othercell
+}