Gentoo Archives: gentoo-commits

From: Andrew Ammerlaan <andrewammerlaan@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-libs/cdf/, sci-libs/cdf/files/
Date: Sat, 29 May 2021 15:52:19
Message-Id: 1622303522.a33ab5b83c948af447f85eeb1cd0ac21d517b66d.andrewammerlaan@gentoo
1 commit: a33ab5b83c948af447f85eeb1cd0ac21d517b66d
2 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
3 AuthorDate: Sat May 29 15:42:42 2021 +0000
4 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
5 CommitDate: Sat May 29 15:52:02 2021 +0000
6 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a33ab5b8
7
8 sci-libs/cdf: add version 3.8.0
9
10 - bumped java version
11 - no longer installs into /usr/CDFLeapSeconds.txt
12 - no longer calls CC directly
13 - restricted bindist
14
15 Closes: https://bugs.gentoo.org/786708
16 Closes: https://bugs.gentoo.org/773076
17 Closes: https://bugs.gentoo.org/633438
18 Closes: https://bugs.gentoo.org/544588
19 Closes: https://bugs.gentoo.org/544588
20 Closes: https://bugs.gentoo.org/731932
21 Closes: https://bugs.gentoo.org/695390
22 Package-Manager: Portage-3.0.19, Repoman-3.0.3
23 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
24
25 sci-libs/cdf/Manifest | 9 ++
26 sci-libs/cdf/cdf-3.5.0.2.ebuild | 1 +
27 .../cdf/{cdf-3.5.0.2.ebuild => cdf-3.8.0.ebuild} | 46 ++++++-----
28 sci-libs/cdf/files/cdf-3.8.0-respect-flags.patch | 96 ++++++++++++++++++++++
29 4 files changed, 133 insertions(+), 19 deletions(-)
30
31 diff --git a/sci-libs/cdf/Manifest b/sci-libs/cdf/Manifest
32 index 96f0d78594e..9e3f6128d7d 100644
33 --- a/sci-libs/cdf/Manifest
34 +++ b/sci-libs/cdf/Manifest
35 @@ -6,3 +6,12 @@ DIST cdf350ug.pdf 1396156 BLAKE2B 39f3e3b0441ef103c9131b3c5523c5a387eb785d545c68
36 DIST cdf35_0-dist-cdf.tar.gz 1137065 BLAKE2B df3235338e63686dd0446663b8738618c45c4e86c858b4f41d3326ebf14d391ecce43309cf5d6a3db4a9f9e53820bf8a73acb77549a0432594859b24acb7eb84 SHA512 f26bd1e298494563cb30c52751bd175124814dca2fe2c05ae056d6c2ad905fb5ddc7da35888c6a07d69914f52481cb4e9fcab9684c9a8a0ca4b80ca449ad3406
37 DIST cdf35_0-dist-java.tar.gz 724055 BLAKE2B 563542821106b040bb0eaefa303cbda46ace5a127cda1936c55e5eaf3b395eb67073a622e84d1bfc33cb65faa4b51710008cfbae86fd680e5cca2c80dbc5162b SHA512 2e69447e9c36ced39a6bfcd1f2a5dfa7c36c04e9a5acac12952c1b415c5191471efbf2cc432b5b31eb37c8ee31bda3e27bce0fa266c5549fb1b0ab86c4dd6c4f
38 DIST cdf35ifd.pdf 560458 BLAKE2B c44722d30c4217b492fe140833ae9c58721040b629cf414fe8d9d7d44433b3f62241d621d4b6d634f54e4f0ecb4c026b66a1e752a1d868b0861eed54d4a95bee SHA512 018a524f7fc8dc5b8b3512ed8bdea42bae141eb65d24b4fbbdac6ecebaeac5c458caf3a476fc4b7c0313b17441cbe7dce32d1002f9344d056cd46853ee3cd438
39 +DIST cdf380crm.pdf 2671048 BLAKE2B 2605d6465c744b57f11d08605aa888ead724b7553a0efd8830dae759eb54c6d0df807cca1c6611fd40b4c5eb9327fbfcd66f0f7cf82b69bf7619385928ebc6dd SHA512 fc1eef589ff0f3cd989d8743cc1d6cfeb5946cf9ae8e4a328ba746b33fe0f6a286cf7b7b7e7cab5e0231bef566c03d7b68afe6c0879e5fb32fc1e6c980f7e081
40 +DIST cdf380csrm.pdf 2409166 BLAKE2B 7e97e61865531b788553ca9747513ec32bc5e1a743e10e5bad5f62980a883d00cfeede975b83826ad72327071062080cd1db611fd40c4e5b3d22caf7d4dd3d0f SHA512 d669f032722e270d3f16f8d9a8920d4536430bd83a509591cf82b447770d16a9c6d9aba17e096f78445c4f0b7f4ab85082cf2480bc9384b46677a2325be0f163
41 +DIST cdf380frm.pdf 2570409 BLAKE2B c8fb1444c7e02297af0c3bffbf58c048077e0d69c4aca8cb3e48331f496dba1551289d2e2b95f9f2d9fabe8048bd56f73a72bab58a52772cae22f184a6b39745 SHA512 de90e4893b976ab9e77f1e9512b2f310b043b8dc921ca43cf1d37e767bf5cbae5d06f91388ff5f4fb1258db5a1149712fa9a5dbc1c2d18f78705021fc31087bb
42 +DIST cdf380prm.pdf 1521804 BLAKE2B 4afa792f3b5f2bda7e896e10ccb6b2b073e127fca9ece229bb3dbe3b8e8920ef5b8cce5a45a15fa648525c8241fbcc678c8eea0a32a3dabad4cd3b9e959e0913 SHA512 413ce06f36d151cc5380884111376fb54108fcf692ac56ed4d96204f56d4d434ca695d42114e1e89626288802cb4d5d48097664e8e0411a041950aff8199fea0
43 +DIST cdf380ug.pdf 1716882 BLAKE2B e36f0a9624756d6d5bf71fcc0958d33d060b7f32dd7bbb93fcf6a58a33a5154017fd0ba8a598fe652919785398d306e84fe7a89b5c4aa0d305ee0bc2fbf20b8f SHA512 f2e865b55d293a17a5d85c36e04d14050b7f17adc97dfc284d95db36ae1b94678e31b107cbab32ad690630bbde0f3f0caf558ecdb4e1d0e60cd5f53b30faa0fc
44 +DIST cdf380vbrm.pdf 2260048 BLAKE2B 30abdf365763df753569289a74013033e0dc56c3ce0a787bcdb9d179d334f4cb79f2b5c6d98427ab9a6451b44e333f48932c152674ce7c9229291b3b714e0f70 SHA512 8552d1f1a83a0f327bc20e8dc03f8728aad132e5765084839ee02900d19c93f9c7f67a1e3f4429cc01d51d75ab00b666d18a247522da2b4fda529cf6333889b5
45 +DIST cdf38_0-dist-cdf.tar.gz 1251571 BLAKE2B d51463fcf196e0c35617b93725104b34a9047ee7ef22d5d5b7ed9ed5816903e435f130b8ebb0d75e0f05c4908b71de3a4c9bab910a9472b3111be22f659e1bc8 SHA512 cc13358ddd5dfa90731ec6d9da0985697ff9e297be0bc03d8132761d479f5ff062c822085d3141a2fa4320ccd7d1b59064fc236f143a00f24b22c6edf0f618ce
46 +DIST cdf38_0-dist-java.tar.gz 1007414 BLAKE2B 64fb991d937e9242d42a9b6524facff35acefe4fb2279b92942faf6a9403fae98c3a6b8e9881a916e8669ead5bca4a404dbc250d3a95be26cbe761b6dfa48227 SHA512 12b4d98561f4c07ef4837daa0fc90e1d1cb78622b3837d3cdc30643eae3e9f1ffe50dfa22e8be56615aa4cf4b983df6bde2d1c9fbe2115142d9fdfa653bee2be
47 +DIST cdf38ifd.pdf 881707 BLAKE2B b80e15e631eb5025317d324893c16838b3a44218cf2c592692eff4d0b778494f2555cf79d2d35b54d66606a82c3835ad896fe809ef363f85ab8261879bf55167 SHA512 2dd3ff5867f5faba3502f877057e9d3110e7be03219dcf5aa657c6685e4a63f847b3d3fbea8d201ae5601a78773c636799cc1ab53e77e12d0ffd5c543322340c
48
49 diff --git a/sci-libs/cdf/cdf-3.5.0.2.ebuild b/sci-libs/cdf/cdf-3.5.0.2.ebuild
50 index 1bdd8d2b12b..2942136cd5f 100644
51 --- a/sci-libs/cdf/cdf-3.5.0.2.ebuild
52 +++ b/sci-libs/cdf/cdf-3.5.0.2.ebuild
53 @@ -27,6 +27,7 @@ LICENSE="CDF"
54 SLOT="0"
55 KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
56 IUSE="doc examples java ncurses static-libs"
57 +RESTRICT="bindist"
58
59 RDEPEND="
60 java? ( >=virtual/jre-1.5:= )
61
62 diff --git a/sci-libs/cdf/cdf-3.5.0.2.ebuild b/sci-libs/cdf/cdf-3.8.0.ebuild
63 similarity index 74%
64 copy from sci-libs/cdf/cdf-3.5.0.2.ebuild
65 copy to sci-libs/cdf/cdf-3.8.0.ebuild
66 index 1bdd8d2b12b..4350f3e58cc 100644
67 --- a/sci-libs/cdf/cdf-3.5.0.2.ebuild
68 +++ b/sci-libs/cdf/cdf-3.8.0.ebuild
69 @@ -1,35 +1,37 @@
70 # Copyright 1999-2021 Gentoo Authors
71 # Distributed under the terms of the GNU General Public License v2
72
73 -EAPI=5
74 +EAPI=7
75
76 -inherit epatch java-pkg-opt-2 multilib toolchain-funcs versionator
77 +inherit java-pkg-opt-2 multilib toolchain-funcs
78
79 -MY_DP="${PN}$(get_version_component_range 1)$(get_version_component_range 2)"
80 -MY_P="${MY_DP}_$(get_version_component_range 3)"
81 +MY_DP="${PN}$(ver_cut 1)$(ver_cut 2)"
82 +MY_P="${MY_DP}_$(ver_cut 3)"
83
84 DESCRIPTION="Common Data Format I/O library for multi-dimensional data sets"
85 HOMEPAGE="https://cdf.gsfc.nasa.gov"
86 -SRC_BASE="http://cdaweb.gsfc.nasa.gov/pub/software/${PN}/dist/${MY_P}/unix/"
87 +SRC_BASE="https://spdf.gsfc.nasa.gov/pub/software/${PN}/dist/${MY_P}/unix/"
88
89 SRC_URI="${SRC_BASE}/${MY_P}-dist-${PN}.tar.gz
90 java? ( ${SRC_BASE}/${MY_P}-dist-java.tar.gz )
91 doc? (
92 + ${SRC_BASE}/${MY_DP}_documentation/${MY_DP}ifd.pdf
93 ${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0crm.pdf
94 + ${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0csrm.pdf
95 ${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0frm.pdf
96 - ${SRC_BASE}/${MY_DP}_documentation/${MY_DP}ifd.pdf
97 ${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0prm.pdf
98 ${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0ug.pdf
99 - java? ( ${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0jrm.pdf )
100 + ${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0vbrm.pdf
101 )"
102
103 LICENSE="CDF"
104 SLOT="0"
105 -KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
106 +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
107 IUSE="doc examples java ncurses static-libs"
108 +RESTRICT="bindist"
109
110 RDEPEND="
111 - java? ( >=virtual/jre-1.5:= )
112 + java? ( >=virtual/jre-1.8:= )
113 ncurses? ( sys-libs/ncurses:0= )
114 "
115 DEPEND="
116 @@ -39,11 +41,14 @@ DEPEND="
117
118 S="${WORKDIR}/${MY_P}-dist"
119
120 +# respect cflags, ldflags, soname
121 +PATCHES=(
122 + "${FILESDIR}"/${P}-respect-flags.patch
123 +)
124 +
125 src_prepare() {
126 - # respect cflags, remove useless scripts
127 - epatch \
128 - "${FILESDIR}"/${P}-Makefile.patch \
129 - "${FILESDIR}"/${PN}-3.2-soname.patch
130 + default
131 +
132 # use proper lib dir
133 sed -i \
134 -e "s:\$(INSTALLDIR)/lib:\$(INSTALLDIR)/$(get_libdir):g" \
135 @@ -102,13 +107,12 @@ src_install() {
136 doenvd "${FILESDIR}"/50cdf
137
138 if use doc; then
139 - dodoc "${DISTDIR}"/${MY_DP}{0{crm,frm,prm,ug},ifd}.pdf
140 - use java && dodoc "${DISTDIR}"/${MY_DP}jrm.pdf
141 + dodoc "${DISTDIR}"/${MY_DP}{0{crm,csrm,frm,prm,ug,vbrm},ifd}.pdf
142 fi
143
144 if use examples; then
145 - insinto /usr/share/doc/${PF}/examples
146 - doins samples/*
147 + docinto /usr/share/doc/${PF}/examples
148 + dodoc samples/*
149 fi
150
151 if use java; then
152 @@ -118,8 +122,12 @@ src_install() {
153 /usr/$(get_libdir)/libcdfNativeLibrary.so
154 java-pkg_dojar */*.jar
155 if use examples; then
156 - insinto /usr/share/doc/${PF}/examples/java
157 - doins examples/*
158 + docinto /usr/share/doc/${PF}/examples/java
159 + dodoc examples/*
160 fi
161 fi
162 +
163 + # move this to a better location
164 + dodir "/usr/share/${PF}"
165 + mv "${ED}/usr/CDFLeapSeconds.txt" "${ED}/usr/share/${PF}/" || die
166 }
167
168 diff --git a/sci-libs/cdf/files/cdf-3.8.0-respect-flags.patch b/sci-libs/cdf/files/cdf-3.8.0-respect-flags.patch
169 new file mode 100644
170 index 00000000000..8ffd226a1ed
171 --- /dev/null
172 +++ b/sci-libs/cdf/files/cdf-3.8.0-respect-flags.patch
173 @@ -0,0 +1,96 @@
174 +diff --git a/Makefile b/Makefile
175 +index 9857fa9..6dc0953 100644
176 +--- a/Makefile
177 ++++ b/Makefile
178 +@@ -896,7 +896,7 @@ install.tools: create.bin copy.tools
179 + install.help_: create.help copy.help
180 +
181 + install.lib: create.lib copy.lib.a
182 +- @if [ -f $(LIBsrcDIR)/libcdf.so ] ; then \
183 ++ @if [ -f $(LIBsrcDIR)/libcdf.$(SHAREDEXT) ] ; then \
184 + $(MAKE) MAKE=$(MAKE) "INSTALLDIR=$(INSTALLDIR)" install.lib.so ; \
185 + else \
186 + $(NULL) ; \
187 +@@ -1010,10 +1010,10 @@ copy.include:
188 + cp $(INCsrcDIR)/cdfconfig.h $(INSTALLDIR)/include
189 +
190 + copy.lib.so:
191 +- @echo cp $(LIBsrcDIR)/libcdf.so $(INSTALLDIR)/lib
192 +- cp $(LIBsrcDIR)/libcdf.so $(INSTALLDIR)/lib/libcdf.$(VERSION).so
193 +- rm -f $(INSTALLDIR)/lib/libcdf.so
194 +- cd $(INSTALLDIR)/lib && ln -s libcdf.$(VERSION).so libcdf.so
195 ++ @echo cp $(LIBsrcDIR)/libcdf.$(SHAREDEXT) $(INSTALLDIR)/lib
196 ++ cp $(LIBsrcDIR)/libcdf.$(SHAREDEXT) $(INSTALLDIR)/lib/libcdf.$(VERSION).so
197 ++ rm -f $(INSTALLDIR)/lib/libcdf.$(SHAREDEXT)
198 ++ cd $(INSTALLDIR)/lib && ln -s libcdf.$(VERSION).so libcdf.$(SHAREDEXT)
199 +
200 + copy.lib.sl:
201 + @echo cp $(LIBsrcDIR)/libcdf.sl $(INSTALLDIR)/lib
202 +diff --git a/src/lib/Makefile b/src/lib/Makefile
203 +index 2017c46..b666ce3 100644
204 +--- a/src/lib/Makefile
205 ++++ b/src/lib/Makefile
206 +@@ -62,9 +62,9 @@ AR=ar
207 + RANLIBcmd=ranlib
208 + MACos=Darwin
209 +
210 +-CFLAGS=$(COPTIONS) $(PIC) -I$(INCLUDEcdf) -I$(ZlibDIR)
211 ++CFLAGS+=$(COPTIONS) $(PIC) -I$(INCLUDEcdf) -I$(ZlibDIR)
212 + CFLAGS2=-DZ_PREFIX
213 +-LDFLAGS=$(LDOPTIONS)
214 ++LDFLAGS+=$(LDOPTIONS)
215 + ARFLAGS=$(AROPTIONS)
216 + ZLIB=zlib
217 +
218 +@@ -120,13 +120,13 @@ ranlib.yes:
219 +
220 + shared.yes: libcdf.$(SHAREDEXT)
221 +
222 +-libcdf.so \
223 ++libcdf.$(SHAREDEXT) \
224 + libcdf.dylib \
225 + libcdf.dll \
226 + libcdf.sl: $(OBJs)
227 + @if [ -f $@ ] ; then rm $@ ; else $(NULL) ; fi
228 +- @echo $(LD) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
229 +- $(LD) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
230 ++ @echo $(LD) $(CFLAGS) $(LDFLAGS) -Wl,-soname,libcdf.$(SHAREDEXT) -o $@ $(OBJs) $(SYSLIBS)
231 ++ $(LD) $(CFLAGS) $(LDFLAGS) -Wl,-soname,libcdf.$(SHAREDEXT) -o $@ $(OBJs) $(SYSLIBS)
232 + # @if [ $(MACVERSION) -gt 0 ]; then \
233 + # rm -f $(MACLIB)/$@; \
234 + # cp $@ $(MACLIB)/libcdf.$(VERSION).dylib; \
235 +@@ -134,8 +134,8 @@ libcdf.sl: $(OBJs)
236 + # fi
237 +
238 + libcdf.o: $(OBJs)
239 +- @echo $(CC) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
240 +- $(CC) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
241 ++ @echo $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
242 ++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
243 +
244 + .c.o:
245 + @if [ "$<" = "cdfgzip.c" ] || [ "$<" = "cdfgzip64.c" ] ; then \
246 +diff --git a/src/tools/Makefile b/src/tools/Makefile
247 +index bac4ca0..ef44264 100644
248 +--- a/src/tools/Makefile
249 ++++ b/src/tools/Makefile
250 +@@ -33,7 +33,7 @@
251 + SHELL=/bin/sh
252 +
253 + CURSES=yes
254 +-CCx=gcc
255 ++CCx=$(CC)
256 + COPTIONS=-I/usr/include/ncurses -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -O2
257 + COPTIONSld=
258 + SYSLIBS=-lgcc
259 +@@ -43,8 +43,8 @@ MAKE=make
260 + INCLUDEcdf= ../include
261 +
262 + CC=$(CCx)
263 +-CFLAGS=$(COPTIONS) -I$(INCLUDEcdf)
264 +-CFLAGSld=$(COPTIONSld)
265 ++CFLAGS+=$(COPTIONS) -I$(INCLUDEcdf)
266 ++CFLAGSld=$(COPTIONSld) $(LDFLAGS)
267 +
268 + WHICHOS=$(shell uname -a | cut -f1 -d" ")
269 + ifeq ("$(WHICHOS)","Darwin")