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commit: dd7e564441676f8fbce36c262cb15aa865f5b545 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Sat Apr 15 00:11:55 2017 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Sat Apr 15 00:11:55 2017 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=dd7e5644 |
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|
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sci-biology/flexbar: version bump, added KEYWORDS |
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|
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We still could filter away '-Wl,-O1' from CXXFLAGS. |
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|
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Package-Manager: Portage-2.3.5, Repoman-2.3.2 |
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|
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sci-biology/flexbar/flexbar-3.0.0.ebuild | 41 ++++++++++++++++++++++++++++++++ |
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1 file changed, 41 insertions(+) |
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|
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diff --git a/sci-biology/flexbar/flexbar-3.0.0.ebuild b/sci-biology/flexbar/flexbar-3.0.0.ebuild |
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new file mode 100644 |
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index 000000000..65f5dd077 |
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--- /dev/null |
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+++ b/sci-biology/flexbar/flexbar-3.0.0.ebuild |
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@@ -0,0 +1,41 @@ |
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+# Copyright 1999-2017 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=6 |
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+ |
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+inherit cmake-utils |
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+ |
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+DESCRIPTION="Barcode, MID tag and adapter sequence removal" |
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+HOMEPAGE="https://github.com/seqan/flexbar" |
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+SRC_URI="https://github.com/seqan/flexbar/archive/v${PV}.tar.gz -> ${P}.tar.gz" |
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+ |
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+LICENSE="GPL-3" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86" |
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+IUSE="" |
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+ |
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+CDEPEND=" |
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+ dev-cpp/tbb |
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+ >=sci-biology/seqan-2.1.1:0 |
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+ sys-libs/zlib |
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+ app-arch/bzip2" |
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+DEPEND="${CDEPEND}" |
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+RDEPEND="${CDEPEND}" |
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+ |
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+# TODO: need to call 'pkg-config --cflags seqan-2.2' and pass it down |
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+src_configure() { |
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+ local CPPFLAGS=${CPPFLAGS} |
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+ append-cppflags `pkg-config --cflags seqan-2.2` |
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+ local CXXFLAGS="${CXXFLAGS}" |
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+ append-cxxflags "-std=c++14" |
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+ cmake-utils_src_configure |
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+} |
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+ |
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+# SeqAn requires C++14! You must compile your application with -std=c++14, -std=gnu++14 or -std=c++1y |
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+# https://github.com/seqan/flexbar/issues/8 |
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+ |
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+src_install(){ |
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+ elog `pwd` |
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+ dobin ../"${P}"_build/flexbar |
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+ dodoc ../"${P}"/README.md |
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+} |