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jlec 10/06/24 20:37:03 |
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|
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Modified: ChangeLog namd-2.7_beta2.ebuild |
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Added: namd-2.7_beta2-r1.ebuild |
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Log: |
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respect LDFLAGS and declarations |
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(Portage version: 2.2_rc67/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.13 sci-chemistry/namd/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/ChangeLog?rev=1.13&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/ChangeLog?rev=1.13&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/ChangeLog?r1=1.12&r2=1.13 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v |
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retrieving revision 1.12 |
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retrieving revision 1.13 |
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diff -u -r1.12 -r1.13 |
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--- ChangeLog 24 Jun 2010 20:06:06 -0000 1.12 |
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+++ ChangeLog 24 Jun 2010 20:37:03 -0000 1.13 |
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@@ -1,6 +1,13 @@ |
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# ChangeLog for sci-chemistry/namd |
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# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.12 2010/06/24 20:06:06 jlec Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.13 2010/06/24 20:37:03 jlec Exp $ |
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+ |
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+*namd-2.7_beta2-r1 (24 Jun 2010) |
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+ |
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+ 24 Jun 2010; Justin Lecher <jlec@g.o> namd-2.7_beta2.ebuild, |
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+ +namd-2.7_beta2-r1.ebuild, +files/namd-2.7-iml-dec.patch, |
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+ +files/namd-2.7-ldflags.patch: |
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+ respect LDFLAGS and declarations |
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|
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24 Jun 2010; Justin Lecher <jlec@g.o> -namd-2.7_beta1.ebuild: |
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Removed unneeded |
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|
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|
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|
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1.2 sci-chemistry/namd/namd-2.7_beta2.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2.ebuild?rev=1.2&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2.ebuild?rev=1.2&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2.ebuild?r1=1.1&r2=1.2 |
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|
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Index: namd-2.7_beta2.ebuild |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2.ebuild,v |
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retrieving revision 1.1 |
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retrieving revision 1.2 |
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diff -u -r1.1 -r1.2 |
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--- namd-2.7_beta2.ebuild 24 Apr 2010 00:02:02 -0000 1.1 |
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+++ namd-2.7_beta2.ebuild 24 Jun 2010 20:37:03 -0000 1.2 |
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@@ -1,6 +1,6 @@ |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2.ebuild,v 1.1 2010/04/24 00:02:02 dberkholz Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2.ebuild,v 1.2 2010/06/24 20:37:03 jlec Exp $ |
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|
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inherit eutils toolchain-funcs flag-o-matic |
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|
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@@ -19,8 +19,8 @@ |
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|
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RESTRICT="fetch" |
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|
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-DEPEND="|| ( app-shells/csh |
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- app-shells/tcsh ) |
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+DEPEND=" |
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+ app-shells/tcsh |
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sys-cluster/charm |
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=sci-libs/fftw-2* |
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dev-lang/tcl" |
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@@ -52,6 +52,8 @@ |
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# apply a few small fixes to make NAMD compile and |
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# link to the proper libraries |
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epatch "${FILESDIR}"/namd-2.7_beta2-gentoo.patch |
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+ epatch "${FILESDIR}"/namd-2.7-ldflags.patch |
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+ epatch "${FILESDIR}"/namd-2.7-iml-dec.patch |
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sed -e "s:charm-6.1.3:charm-${CHARM_VERSION}:" \ |
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Make.charm || \ |
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die |
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|
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|
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|
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1.1 sci-chemistry/namd/namd-2.7_beta2-r1.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2-r1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2-r1.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: namd-2.7_beta2-r1.ebuild |
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=================================================================== |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2-r1.ebuild,v 1.1 2010/06/24 20:37:03 jlec Exp $ |
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|
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inherit eutils toolchain-funcs flag-o-matic |
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|
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DESCRIPTION="A powerful and highly parallelized molecular dynamics code" |
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LICENSE="namd" |
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HOMEPAGE="http://www.ks.uiuc.edu/Research/namd/" |
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|
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MY_PN="NAMD" |
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MY_PV="2.7b2" |
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|
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SRC_URI="${MY_PN}_${MY_PV}_Source.tar.gz" |
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|
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SLOT="0" |
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KEYWORDS="~amd64" |
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IUSE="" |
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|
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RESTRICT="fetch" |
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|
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DEPEND=" |
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app-shells/tcsh |
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sys-cluster/charm |
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=sci-libs/fftw-2* |
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dev-lang/tcl" |
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|
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RDEPEND=${DEPEND} |
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|
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NAMD_ARCH="Linux-x86_64-g++" |
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|
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NAMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=NAMD" |
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|
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S="${WORKDIR}/${MY_PN}_${MY_PV}_Source" |
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|
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pkg_nofetch() { |
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echo |
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einfo "Please download ${MY_PN}_${MY_PV}_Source.tar.gz from" |
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einfo "${NAMD_DOWNLOAD}" |
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einfo "after agreeing to the license and then move it to" |
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einfo "${DISTDIR}" |
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einfo "Be sure to select the ${MY_PV} version!" |
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echo |
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} |
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|
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src_unpack() { |
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unpack ${A} |
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cd "${S}" |
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|
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CHARM_VERSION=$(best_version sys-cluster/charm | cut -d- -f3) |
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|
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# apply a few small fixes to make NAMD compile and |
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# link to the proper libraries |
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epatch "${FILESDIR}"/namd-2.7_beta2-gentoo.patch |
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epatch "${FILESDIR}"/namd-2.7-ldflags.patch |
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epatch "${FILESDIR}"/namd-2.7-iml-dec.patch |
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sed -e "s:charm-6.1.3:charm-${CHARM_VERSION}:" \ |
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Make.charm || \ |
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die |
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|
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rm -f charm-6.1.3.tar || die |
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|
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# proper compiler and cflags |
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sed -e "s/g++/$(tc-getCXX)/" \ |
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-e "s/gcc/$(tc-getCC)/" \ |
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-e "s/CXXOPTS = -O3 -m64 -fexpensive-optimizations -ffast-math/CXXOPTS = ${CXXFLAGS}/" \ |
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-e "s/COPTS = -O3 -m64 -fexpensive-optimizations -ffast-math/COPTS = ${CFLAGS}/" \ |
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-i arch/${NAMD_ARCH}.arch || \ |
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die "Failed to setup ${NAMD_ARCH}.arch" |
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|
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sed -e "s/gentoo-libdir/$(get_libdir)/g" \ |
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-e "s/gentoo-charm/charm-${CHARM_VERSION}/g" \ |
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-i Makefile || die "Failed gentooizing Makefile." |
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sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.fftw || \ |
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die "Failed gentooizing Linux-x86_64.fftw." |
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sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.tcl || \ |
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die "Failed gentooizing Linux-x86_64.tcl." |
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|
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# configure |
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./config ${NAMD_ARCH} |
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} |
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|
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src_compile() { |
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# build namd |
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cd "${S}/${NAMD_ARCH}" |
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emake || die "Failed to build namd" |
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} |
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|
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src_install() { |
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cd "${S}/${NAMD_ARCH}" |
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|
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# the binaries |
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dobin ${PN}2 psfgen flipbinpdb flipdcd || \ |
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die "Failed to install binaries" |
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|
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cd "${S}" |
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|
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# some docs |
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dodoc announce.txt license.txt notes.txt || \ |
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die "Failed to install docs" |
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} |
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|
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pkg_postinst() { |
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echo |
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einfo "For detailed instructions on how to run and configure" |
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einfo "NAMD please consults the extensive documentation at" |
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einfo "http://www.ks.uiuc.edu/Research/namd/" |
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einfo "and the NAMD tutorials available at" |
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einfo "http://www.ks.uiuc.edu/Training/Tutorials/" |
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einfo "Have fun :)" |
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echo |
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} |