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weaver 10/05/31 22:05:20 |
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|
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Modified: ChangeLog |
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Added: ncbi-tools++-2009.05.15-r4.ebuild |
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Removed: ncbi-tools++-2009.05.15-r3.ebuild |
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Log: |
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Address bug 300722, bug 312921 |
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(Portage version: 2.2_rc67/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.13 sci-biology/ncbi-tools++/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?rev=1.13&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?rev=1.13&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?r1=1.12&r2=1.13 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v |
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retrieving revision 1.12 |
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retrieving revision 1.13 |
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diff -u -r1.12 -r1.13 |
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--- ChangeLog 11 Mar 2010 20:49:57 -0000 1.12 |
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+++ ChangeLog 31 May 2010 22:05:20 -0000 1.13 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-biology/ncbi-tools++ |
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# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.12 2010/03/11 20:49:57 weaver Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.13 2010/05/31 22:05:20 weaver Exp $ |
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+ |
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+*ncbi-tools++-2009.05.15-r4 (31 May 2010) |
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+ |
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+ 31 May 2010; Andrey Kislyuk <weaver@g.o> |
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+ -ncbi-tools++-2009.05.15-r3.ebuild, +ncbi-tools++-2009.05.15-r4.ebuild: |
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+ Address bug 300722, bug 312921 |
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|
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*ncbi-tools++-2009.05.15-r3 (11 Mar 2010) |
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|
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|
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|
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|
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1.1 sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r4.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r4.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r4.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: ncbi-tools++-2009.05.15-r4.ebuild |
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=================================================================== |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r4.ebuild,v 1.1 2010/05/31 22:05:20 weaver Exp $ |
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|
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EAPI="3" |
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|
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inherit eutils multilib |
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|
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MY_TAG="May_15_2009" |
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MY_Y="${MY_TAG/*_/}" |
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MY_P="ncbi_cxx--${MY_TAG}" |
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|
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DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+" |
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HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit" |
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SRC_URI="ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/${MY_Y}/${MY_TAG}/${MY_P}.tar.gz" |
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|
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LICENSE="public-domain" |
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SLOT="0" |
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#IUSE="X unicode opengl gnutls test" |
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IUSE="sqlite" |
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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|
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# wxGTK: must run eselect wxwindows after installing wxgtk or build will fail. Check and abort here. |
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# dev-libs/xalan-c - problems detecting, api mismatch? |
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|
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# apparently gbench-only dependencies |
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# dev-libs/libxml2 |
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# dev-libs/libxslt |
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# dev-libs/xerces-c |
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# dev-libs/lzo:2 |
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# dev-libs/boost |
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# app-text/sablotron |
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# media-libs/libpng |
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# media-libs/tiff |
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# media-libs/jpeg |
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# x11-libs/libXpm |
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# unicode? ( dev-libs/icu ) |
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# opengl? ( media-libs/glut |
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# media-libs/mesa ) |
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# gnutls? ( net-libs/gnutls ) |
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# X? ( x11-libs/fltk:1.1 |
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# x11-libs/wxGTK ) |
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|
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DEPEND="sqlite? ( dev-db/sqlite:3 )" |
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RDEPEND="${DEPEND}" |
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|
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S="${WORKDIR}/${MY_P}" |
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|
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src_prepare() { |
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epatch "${FILESDIR}"/${P}-gcc44.patch |
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sed -i -e 's/-print-file-name=libstdc++.a//' \ |
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-e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \ |
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src/build-system/configure || die |
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} |
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|
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src_configure() { |
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# required with gcc-4.4 and code turned on by --with-mt |
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export CPPFLAGS="${CPPFLAGS} -fpermissive" |
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|
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# econf fails |
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# --with-bin-release and --without-ftds are workarounds for build system bugs |
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# --without-boost: see bug 312921 |
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# NB: build system supports ICC |
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"${S}"/configure --without-debug \ |
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--with-bin-release \ |
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--without-static \ |
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--with-dll \ |
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--without-ftds \ |
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--without-boost \ |
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--prefix="${ED}"/usr \ |
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--libdir="${ED}"/usr/$(get_libdir)/${PN} \ |
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--with-z="${EPREFIX}/usr" \ |
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--with-bz2="${EPREFIX}/usr" \ |
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--with-pcre="${EPREFIX}/usr" \ |
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--with-openssl="${EPREFIX}/usr" \ |
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--with-mt \ |
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|| die |
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|
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# apparently gbench-only configs |
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# --with-boost="/usr" \ |
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# --with-sablot="/usr" \ |
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# --with-icu="/usr" \ |
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# --with-fltk="/usr" \ |
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# --with-mesa="/usr" \ |
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# --with-glut="/usr" \ |
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# --with-wxwidgets="/usr" \ |
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# problems detecting this |
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# --with-xalan="/usr" \ |
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} |
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|
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src_compile() { |
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emake all_r -C GCC*-Release*/build || die |
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} |
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|
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src_install() { |
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emake install || die |
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# File collisions with sci-biology/ncbi-tools |
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rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp} |
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|
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echo "LD_LIBRARY_PATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN} |
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doenvd "${S}/99${PN}" |
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} |
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|
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pkg_postinst() { |
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einfo 'Please run "source /etc/profile" before using this package in the current shell.' |
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} |
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