1 |
commit: f40ae6aa62652f4c594808356512cc822aebd8aa |
2 |
Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
3 |
AuthorDate: Mon Oct 26 10:29:44 2015 +0000 |
4 |
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
5 |
CommitDate: Mon Oct 26 10:30:01 2015 +0000 |
6 |
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f40ae6aa |
7 |
|
8 |
sci-biology/biopython: Version Bump |
9 |
|
10 |
Package-Manager: portage-2.2.23 |
11 |
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
12 |
|
13 |
sci-biology/biopython/Manifest | 1 + |
14 |
sci-biology/biopython/biopython-1.66.ebuild | 56 +++++++++++++++++++++++++++++ |
15 |
2 files changed, 57 insertions(+) |
16 |
|
17 |
diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest |
18 |
index e835e24..a54d05e 100644 |
19 |
--- a/sci-biology/biopython/Manifest |
20 |
+++ b/sci-biology/biopython/Manifest |
21 |
@@ -1 +1,2 @@ |
22 |
DIST biopython-1.65.tar.gz 12641342 SHA256 463cc81db84e9bfcdfb15629511c81ed556a6c0287e670dbfe80f03c65d2a88e SHA512 2a9c6a89d0279374c243938d13bfdd6f2b124a08afbfb0c262e1e4827c48a141fb9941f4cdb960f76b523f0ac152095a8c6ea566d9b469ce9daf8a7e7993f7af WHIRLPOOL 40757938c0eb7e30c9609ef5aa2d397fa21ad92cd20c9b6300cde1b381a0e6c21e4ebb7f4d25bf02651789437d7d86341154b907ccc0007759c17939f2e29da2 |
23 |
+DIST biopython-1.66.tar.gz 13724754 SHA256 5178ea3b343b1d8710f39205386093e5369ed653aa020e1b0c4b7622a59346c1 SHA512 6bb01f1058728f957527447df82ffbb9027e74564e81c8308b3404d033a0f12fef50da05b343bd4c4eae98508931eedc9c4bc23b2efdf36bbb49f1557fa52d71 WHIRLPOOL 0cfe3f4829ec72afa466b17cf6745cc334105713ebeeb06019e2df94acc1289aeb07a7bba70a50afeae00de90c48d2455a1af8cf26f916ceb4c0ab92a4a05fbd |
24 |
|
25 |
diff --git a/sci-biology/biopython/biopython-1.66.ebuild b/sci-biology/biopython/biopython-1.66.ebuild |
26 |
new file mode 100644 |
27 |
index 0000000..d5c5fb6 |
28 |
--- /dev/null |
29 |
+++ b/sci-biology/biopython/biopython-1.66.ebuild |
30 |
@@ -0,0 +1,56 @@ |
31 |
+# Copyright 1999-2015 Gentoo Foundation |
32 |
+# Distributed under the terms of the GNU General Public License v2 |
33 |
+# $Id$ |
34 |
+ |
35 |
+EAPI=5 |
36 |
+ |
37 |
+PYTHON_COMPAT=( python2_7 python3_{3,4} pypy ) |
38 |
+ |
39 |
+inherit distutils-r1 eutils |
40 |
+ |
41 |
+DESCRIPTION="Python modules for computational molecular biology" |
42 |
+HOMEPAGE="http://www.biopython.org/ https://pypi.python.org/pypi/biopython/" |
43 |
+SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" |
44 |
+ |
45 |
+LICENSE="HPND" |
46 |
+SLOT="0" |
47 |
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" |
48 |
+IUSE="" |
49 |
+ |
50 |
+RDEPEND=" |
51 |
+ dev-python/matplotlib[$(python_gen_usedep 'python*')] |
52 |
+ dev-python/networkx[$(python_gen_usedep 'python*')] |
53 |
+ dev-python/numpy[$(python_gen_usedep 'python*')] |
54 |
+ dev-python/rdflib[$(python_gen_usedep 'python*')] |
55 |
+ dev-python/pygraphviz[$(python_gen_usedep 'python2*')] |
56 |
+ dev-python/reportlab[$(python_gen_usedep 'python*')] |
57 |
+ media-gfx/pydot[$(python_gen_usedep 'python2*')] |
58 |
+ " |
59 |
+DEPEND="${RDEPEND} |
60 |
+ sys-devel/flex" |
61 |
+ |
62 |
+DOCS=( CONTRIB DEPRECATED NEWS README Doc/. ) |
63 |
+ |
64 |
+python_test() { |
65 |
+ distutils_install_for_testing |
66 |
+ cp -r "${S}"/{Doc,Tests} "${TEST_DIR}"/lib/ || die |
67 |
+ cd "${TEST_DIR}"/lib/Tests || die |
68 |
+ rm ./test_BioSQL_psycopg2.py ./test_BioSQL_MySQLdb.py ./test_BioSQL_mysql_connector.py || die |
69 |
+ ${PYTHON} run_tests.py --offline --verbose || die |
70 |
+} |
71 |
+ |
72 |
+python_install_all() { |
73 |
+ distutils-r1_python_install_all |
74 |
+ |
75 |
+ dodir /usr/share/${PN} |
76 |
+ cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die |
77 |
+} |
78 |
+ |
79 |
+pkg_postinst() { |
80 |
+ elog "For database support you need to install:" |
81 |
+ optfeature "MySQL" dev-python/mysql-python |
82 |
+ optfeature "PostGreSQL" dev-python/psycopg |
83 |
+ echo |
84 |
+ elog "Some applications need extra packages:" |
85 |
+ optfeature "EMBOSS (The European Molecular Biology Open Software Suite)" sci-biology/emboss |
86 |
+} |