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commit: 08a272766f1feb9206762a4c51839c55a9c7637d |
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Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Mon Dec 30 15:20:32 2019 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Mon Dec 30 15:20:32 2019 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=08a27276 |
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|
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sci-libs/libmaus2: version bump to 2.0.689 |
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|
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Package-Manager: Portage-2.3.75, Repoman-2.3.17 |
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Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz> |
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|
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sci-libs/libmaus2/libmaus2-2.0.689.ebuild | 45 +++++++++++++++++++++++++++++++ |
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1 file changed, 45 insertions(+) |
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|
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diff --git a/sci-libs/libmaus2/libmaus2-2.0.689.ebuild b/sci-libs/libmaus2/libmaus2-2.0.689.ebuild |
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new file mode 100644 |
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index 000000000..50b82d5aa |
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--- /dev/null |
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+++ b/sci-libs/libmaus2/libmaus2-2.0.689.ebuild |
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@@ -0,0 +1,45 @@ |
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+# Copyright 2019 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=7 |
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+ |
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+inherit autotools |
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+ |
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+release_data="20191120141844" |
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+DESCRIPTION="Library for biobambam2" |
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+HOMEPAGE="https://github.com/gt1/libmaus" |
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+SRC_URI="https://gitlab.com/german.tischler/${PN}/-/archive/${PV}-release-${release_data}/${P}-release-${release_data}.tar.gz -> ${P}.tar.gz" |
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+ |
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+LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86" |
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+IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2" |
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+ |
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+DEPEND=" |
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+ !sci-libs/libmaus |
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+ >=sci-libs/io_lib-1.14.11 |
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+ app-arch/snappy |
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+ sci-libs/fftw |
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+ sci-libs/hdf5 |
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+ net-libs/gnutls |
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+ dev-libs/nettle" |
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+# --with-daligner |
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+# --with-irods |
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+# old github.com release tarballs |
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+# S="${WORKDIR}"/libmaus2-master-27828cd78121d5e4b19c263c5527e462360f5901 |
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+# current gitlab.com release tarballs |
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+S="${WORKDIR}/${P}-release-${release_data}" |
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+ |
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+src_configure(){ |
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+ local CONFIG_OPTS |
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+ use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 ) |
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+ ( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 ) |
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+ econf --with-snappy --with-io_lib $CONFIG_OPTS \ |
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+ --with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw |
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+} |
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+ |
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+pkg_postinst(){ |
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+ einfo "The io_lib, snappy dependencies are not strictly needed" |
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+ einfo "but were forced for optimal libmaus2 performance." |
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+ einfo "igzip is only used if gzip level is set to 11." |
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+} |