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commit: 39d413c0adc6a8d96442cc9562c516c53021add8 |
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Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Tue May 1 22:13:29 2018 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Tue May 1 22:13:29 2018 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=39d413c0 |
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sci-biology/jellyfish: version bump and a few tweaks |
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Install properly PDF documentation. |
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Use ${PV} in SRC_URI. |
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Update SRC_URI to reflect github hosting these days. |
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Package-Manager: Portage-2.3.31, Repoman-2.3.9 |
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.../jellyfish/{jellyfish-1.1.11-r2.ebuild => jellyfish-1.1.12.ebuild} | 4 ++-- |
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.../jellyfish/{jellyfish-2.2.9.ebuild => jellyfish-2.2.10.ebuild} | 0 |
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2 files changed, 2 insertions(+), 2 deletions(-) |
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diff --git a/sci-biology/jellyfish/jellyfish-1.1.11-r2.ebuild b/sci-biology/jellyfish/jellyfish-1.1.12.ebuild |
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similarity index 91% |
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rename from sci-biology/jellyfish/jellyfish-1.1.11-r2.ebuild |
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rename to sci-biology/jellyfish/jellyfish-1.1.12.ebuild |
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index a9b0ce4d1..a22be5187 100644 |
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--- a/sci-biology/jellyfish/jellyfish-1.1.11-r2.ebuild |
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+++ b/sci-biology/jellyfish/jellyfish-1.1.12.ebuild |
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@@ -7,8 +7,7 @@ inherit eutils flag-o-matic |
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DESCRIPTION="k-mer counter within reads for assemblies" |
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HOMEPAGE="http://www.cbcb.umd.edu/software/jellyfish" |
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-SRC_URI="http://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz |
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- http://www.cbcb.umd.edu/software/jellyfish/jellyfish-manual-1.1.pdf" |
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+SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz" |
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# older version is hidden in trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11 |
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# also was bundled in quorum-0.2.1 and MaSuRca-2.1.0 |
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@@ -45,4 +44,5 @@ src_install(){ |
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mv "${ED}"/usr/include/"${P}"/"${PN}"/* "${ED}/usr/include/${PN}${SLOT}/" || die |
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rm -r "${ED}/usr/include/${P}" || die |
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mv "${ED}"/usr/share/man/man1/jellyfish.1 "${ED}"/usr/share/man/man1/jellyfish"${SLOT}".1 || die |
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+ newdoc doc/jellyfish.pdf jellyfish"${SLOT}".pdf |
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} |
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diff --git a/sci-biology/jellyfish/jellyfish-2.2.9.ebuild b/sci-biology/jellyfish/jellyfish-2.2.10.ebuild |
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similarity index 100% |
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rename from sci-biology/jellyfish/jellyfish-2.2.9.ebuild |
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rename to sci-biology/jellyfish/jellyfish-2.2.10.ebuild |
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