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commit: 9ee84fa74a5bc48850d98dd49edbe223e8085e5a |
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Author: cel <cel.gentoo <AT> gmail <DOT> com> |
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AuthorDate: Thu Sep 26 19:35:23 2013 +0000 |
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Commit: Nicolas Bock <nicolasbock <AT> gmail <DOT> com> |
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CommitDate: Thu Sep 26 19:35:23 2013 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9ee84fa7 |
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|
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sci-biology/bowtie: fixed check for sse2 support. |
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|
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--- |
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sci-biology/bowtie/bowtie-2.1.0.ebuild | 21 ++++++++------------- |
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1 file changed, 8 insertions(+), 13 deletions(-) |
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|
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diff --git a/sci-biology/bowtie/bowtie-2.1.0.ebuild b/sci-biology/bowtie/bowtie-2.1.0.ebuild |
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index c2c5024..26bf770 100644 |
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--- a/sci-biology/bowtie/bowtie-2.1.0.ebuild |
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+++ b/sci-biology/bowtie/bowtie-2.1.0.ebuild |
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@@ -4,7 +4,7 @@ |
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|
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EAPI=5 |
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|
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-inherit eutils flag-o-matic toolchain-funcs |
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+inherit eutils toolchain-funcs |
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|
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DESCRIPTION="An ultrafast memory-efficient short read aligner" |
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HOMEPAGE="http://bowtie-bio.sourceforge.net/" |
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@@ -12,23 +12,19 @@ SRC_URI="mirror://sourceforge/bowtie-bio/${P}-source.zip" |
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|
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LICENSE="GPL-3" |
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SLOT="2" |
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-IUSE="sse2 examples" |
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+IUSE="examples" |
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KEYWORDS="~amd64 ~x86" |
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|
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-CDEPEND="dev-lang/perl" |
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-DEPEND="${CDEPEND} \ |
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+RDEPEND="dev-lang/perl" |
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+DEPEND="${RDEPEND} |
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app-arch/unzip" |
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-RDEPEND="${CDEPEND}" |
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|
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S="${WORKDIR}/${PN}2-${PV}" |
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|
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pkg_pretend() { |
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- if ! use sse2 ; then |
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- ebegin |
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- eerror "bowtie2 requires sse2 support. Please make sure your system supports" |
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- eerror "sse2 and enable the sse2 use flag." |
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- eend |
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- die |
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+ grep "sse2" /proc/cpuinfo > /dev/null |
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+ if [[ $? -ne 0 ]] ; then |
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+ ewarn "Your processor does not support sse2. Bowtie will probably not work on this machine." |
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fi |
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} |
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|
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@@ -37,12 +33,11 @@ src_prepare() { |
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} |
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|
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src_compile() { |
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- use sse2 && append-cxxflags -msse2 |
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emake \ |
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CC="$(tc-getCC)" \ |
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CPP="$(tc-getCXX)" \ |
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EXTRA_FLAGS="${LDFLAGS}" \ |
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- RELEASE_FLAGS="${CXXFLAGS}" |
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+ RELEASE_FLAGS="${CXXFLAGS} -msse2" |
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} |
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|
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src_install() { |