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commit: 468924259258c048b50e5cf6f258d7985a78275e |
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Author: Volkmar W. Pogatzki <gentoo <AT> pogatzki <DOT> net> |
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AuthorDate: Sat Oct 23 14:24:41 2021 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Sat Oct 23 14:24:41 2021 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=46892425 |
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|
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dev-lang/R: remove 4.0.4 |
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|
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Closes: https://github.com/gentoo/gentoo/pull/22680 |
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Closes: https://bugs.gentoo.org/801145 |
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Package-Manager: Portage-3.0.20, Repoman-3.0.3 |
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Signed-off-by: Volkmar W. Pogatzki <gentoo <AT> pogatzki.net> |
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Signed-off-by: David Seifert <soap <AT> gentoo.org> |
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|
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dev-lang/R/Manifest | 1 - |
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dev-lang/R/R-4.0.4.ebuild | 243 ---------------------------------------------- |
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2 files changed, 244 deletions(-) |
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|
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diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest |
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index e217fbc0125..756a8d080ef 100644 |
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--- a/dev-lang/R/Manifest |
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+++ b/dev-lang/R/Manifest |
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@@ -1,4 +1,3 @@ |
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-DIST R-4.0.4.tar.gz 33687611 BLAKE2B 40cdfd98fe6c9193deb729d151631c2b0f935accf5ea6251704b633d2688278af1a5a67317152be023fb4a10315c64e473f58276bb0c3fadb1141c35391ad22e SHA512 811c4407a083eb776f92c3cbacb1dc7eada8890a8c27678c6c82bef9db52b1afaefeb408fbe11e46922740adee498f32e7ddf7451b3ab89cf60773737e47f8be |
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DIST R-4.0.5.tar.gz 32466444 BLAKE2B 5dbbd289f4fd6347b4109eecaf65b50b5793a83edddd2cb391c20473607f136d91a8e9f4ab9e453f6927d2ca9145762920424e3a1dcea89309afde56efd5d32c SHA512 6ff5b0f9cb6b17f66cde1f5585d1b33659dbae8919d34c2e593f68a0bff4d0425aa9704d99284d103702a9cd42f613311f3a87af6b939b1af65dcec80bf2ca8c |
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DIST R-4.1.0.tar.gz 33714683 BLAKE2B 22ba966b5a29f153f3ce6cbc467e815c397e7c6aade0db62c7d2ae044056d9227da4dcb8fbf33e661548f4f434c328415e297c6b07b3932ef3f47358c2543f42 SHA512 41519bf06a1ebc2bb582e9a7c35d0e82e213312dec8147861a7f9b28ee750cd40dfbf02737602d05698641fcea6182b0da8131e83edacc358e98eca0a393b729 |
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DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06 |
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|
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diff --git a/dev-lang/R/R-4.0.4.ebuild b/dev-lang/R/R-4.0.4.ebuild |
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deleted file mode 100644 |
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index e85bf329f62..00000000000 |
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--- a/dev-lang/R/R-4.0.4.ebuild |
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+++ /dev/null |
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@@ -1,243 +0,0 @@ |
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-# Copyright 1999-2021 Gentoo Authors |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=7 |
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- |
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-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs |
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- |
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-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion |
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-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6 |
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- |
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-DESCRIPTION="Language and environment for statistical computing and graphics" |
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-HOMEPAGE="http://www.r-project.org/" |
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-SRC_URI=" |
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- mirror://cran/src/base/R-4/${P}.tar.gz |
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- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion" |
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- |
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-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" |
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-SLOT="0" |
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-KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux" |
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-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X" |
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- |
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-# One test required profiling in v4.0.2, check the upstream bug: |
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-# |
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-# https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17836 |
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-# |
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-REQUIRED_USE="png? ( || ( cairo X ) ) |
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- jpeg? ( || ( cairo X ) ) |
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- tiff? ( || ( cairo X ) ) |
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- test? ( profile ) |
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-" |
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- |
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-# At least one package installation in the test suite requires TeX, |
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-# and will fail without it (bug #718056). |
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-BDEPEND="virtual/pkgconfig |
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- doc? ( |
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- virtual/latex-base |
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- dev-texlive/texlive-fontsrecommended |
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- ) |
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- test? ( virtual/latex-base )" |
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-DEPEND=" |
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- app-arch/bzip2:0= |
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- app-arch/xz-utils:0= |
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- app-text/ghostscript-gpl |
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- dev-libs/libpcre2:= |
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- net-libs/libtirpc |
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- net-misc/curl |
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- virtual/blas:0 |
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- || ( sys-apps/coreutils app-misc/realpath ) |
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- cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= ) |
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- icu? ( dev-libs/icu:= ) |
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- jpeg? ( virtual/jpeg:0 ) |
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- lapack? ( virtual/lapack:0 ) |
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- perl? ( dev-lang/perl ) |
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- png? ( media-libs/libpng:0= ) |
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- readline? ( sys-libs/readline:0= ) |
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- tiff? ( media-libs/tiff:0= ) |
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- tk? ( dev-lang/tk:0= ) |
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- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" |
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- |
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-RDEPEND="${DEPEND} |
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- sys-libs/zlib:0[minizip] |
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- java? ( >=virtual/jre-1.5 )" |
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- |
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-RESTRICT="minimal? ( test ) |
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- !test? ( test )" |
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- |
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-PATCHES=( |
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- "${FILESDIR}"/${PN}-3.4.1-parallel.patch |
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- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch |
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- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch |
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- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch |
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-) |
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- |
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-pkg_pretend() { |
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- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp |
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-} |
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- |
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-pkg_setup() { |
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- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then |
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- FORTRAN_NEED_OPENMP=1 |
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- fi |
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- fortran-2_pkg_setup |
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- filter-ldflags -Wl,-Bdirect -Bdirect |
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- # avoid using existing R installation |
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- unset R_HOME |
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- # Temporary fix for bug #419761 |
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- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then |
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- append-flags -fno-ipa-cp-clone |
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- fi |
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-} |
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- |
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-src_prepare() { |
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- default |
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- |
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- # fix packages.html for doc (gentoo bug #205103) |
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- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ |
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- -i src/library/tools/R/Rd.R || die |
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- |
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- # fix Rscript path when installed (gentoo bug #221061) |
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- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \ |
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- -i src/unix/Makefile.in || die "sed unix Makefile failed" |
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- |
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- # fix HTML links to manual (gentoo bug #273957) |
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- sed -e 's:\.\./manual/:manual/:g' \ |
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- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" |
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- |
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- use lapack && \ |
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- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" |
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- |
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- if use X; then |
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- export R_BROWSER="$(type -p xdg-open)" |
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- export R_PDFVIEWER="$(type -p xdg-open)" |
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- fi |
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- use perl && \ |
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- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" |
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- |
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- # don't search /usr/local |
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- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die |
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- # Fix for Darwin (OS X) |
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- if use prefix; then |
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- if [[ ${CHOST} == *-darwin* ]] ; then |
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- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ |
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- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ |
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- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ |
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- -e "/SHLIB_EXT/s/\.so/.dylib/" \ |
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- -i configure.ac || die |
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- # sort of "undo" 2.14.1-rmath-shared.patch |
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- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \ |
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- -i src/nmath/standalone/Makefile.in || die |
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- else |
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- append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib" |
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- fi |
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- fi |
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- AT_M4DIR=m4 |
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- eautoreconf |
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-} |
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- |
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-src_configure() { |
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- # --with-system-tre \ |
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- # tre is patched from upstream |
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- econf \ |
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- --enable-byte-compiled-packages \ |
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- --enable-R-shlib \ |
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- --disable-R-framework \ |
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- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ |
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- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ |
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- $(use_enable java) \ |
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- $(use_enable nls) \ |
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- $(use_enable openmp) \ |
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- $(use_enable profile R-profiling) \ |
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- $(use_enable profile memory-profiling) \ |
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- $(use_enable static-libs static) \ |
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- $(use_enable static-libs R-static-lib) \ |
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- $(use_with cairo) \ |
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- $(use_with icu ICU) \ |
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- $(use_with jpeg jpeglib) \ |
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- $(use_with lapack) \ |
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- $(use_with !minimal recommended-packages) \ |
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- $(use_with png libpng) \ |
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- $(use_with readline) \ |
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- $(use_with tiff libtiff) \ |
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- $(use_with tk tcltk) \ |
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- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \ |
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- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \ |
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- $(use_with X x) |
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-} |
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- |
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-src_compile() { |
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- export VARTEXFONTS="${T}/fonts" |
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- emake AR="$(tc-getAR)" |
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- emake -C src/nmath/standalone \ |
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- shared $(use static-libs && echo static) AR="$(tc-getAR)" |
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- use doc && emake info pdf |
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-} |
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- |
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-src_install() { |
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- default |
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- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install |
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- |
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- if use doc; then |
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- emake DESTDIR="${D}" install-info install-pdf |
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- dosym ../manual /usr/share/doc/${PF}/html/manual |
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- fi |
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- |
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- cat > 99R <<-EOF |
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- LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib |
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- R_HOME=${EROOT}/usr/$(get_libdir)/${PN} |
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- EOF |
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- doenvd 99R |
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- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN} |
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- # The buildsystem has a different understanding of install_names than |
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- # we require. Since it builds modules like shared objects (wrong), many |
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- # objects (all modules) get an incorrect install_name. Fixing the build |
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- # system here is not really trivial. |
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- if [[ ${CHOST} == *-darwin* ]] ; then |
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- local mod |
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- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null |
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- for mod in $(find . -name "*.dylib") ; do |
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- mod=${mod#./} |
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- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \ |
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- "${mod}" |
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- done |
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- popd > /dev/null |
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- fi |
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- |
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- # Users are encouraged to access some of the the R documentation |
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- # interactively, through functions like "contributors()" that |
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- # tries to open the "AUTHORS" file. Other files can be accessed |
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- # by name with RShowDoc(), and the documentation for e.g. license() |
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- # and RShowDoc() suggests a few of these names. Here we try to |
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- # collect as many names as possible that a user might actually |
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- # try to view through R, because if we don't decompress them, |
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- # then R doesn't know what to do with 'em. Bug #556706. |
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- INTERACTIVE_DOCS=( |
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- AUTHORS |
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- COPYING |
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- FAQ |
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- NEWS |
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- THANKS |
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- ) |
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- |
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- # Other data sources that are shipped as "documentation," but which |
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- # need to be accessible via their original unmolested filenames. |
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- INTERACTIVE_DATA=( |
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- BioC_mirrors.csv |
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- CRAN_mirrors.csv |
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- KEYWORDS.db |
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- NEWS.rds |
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- ) |
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- |
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- NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" ) |
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- |
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- for f in "${NOCOMPRESS_DOCS[@]}"; do |
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- docompress -x "/usr/share/doc/${PF}/${f}" |
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- done |
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-} |
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- |
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-pkg_postinst() { |
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- if use java; then |
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- einfo "Re-initializing java paths for ${P}" |
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- R CMD javareconf |
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- fi |
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-} |