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commit: b0f5d1f1974db03f189da3df7aa6d64532f4949d |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Sun Mar 26 22:48:16 2017 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Sun Mar 26 22:48:16 2017 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b0f5d1f1 |
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|
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sci-biology/ncbi-tools++: fix table2asn linking |
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|
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Package-Manager: Portage-2.3.5, Repoman-2.3.1 |
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|
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.../ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch | 13 +++++++++++++ |
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sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 1 + |
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2 files changed, 14 insertions(+) |
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|
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diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch |
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new file mode 100644 |
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index 000000000..222cb2c06 |
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--- /dev/null |
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+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch |
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@@ -0,0 +1,13 @@ |
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+--- ncbi_cxx--18_0_0/src/app/table2asn/Makefile.table2asn.app.ori 2017-03-27 00:41:58.742206850 +0200 |
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++++ ncbi_cxx--18_0_0/src/app/table2asn/Makefile.table2asn.app 2017-03-27 00:43:13.142206236 +0200 |
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+@@ -12,8 +12,8 @@ |
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+ |
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+ LIB = xdiscrepancy xalgophytree fastme prosplign xalgoalignutil xalgoseq xmlwrapp \ |
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+ xvalidate xobjwrite xobjreadex valerr biotree macro \ |
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+- $(OBJEDIT_LIBS) $(XFORMAT_LIBS) $(BLAST_LIBS) id2cli \ |
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+- xregexp $(PCRE_LIB) $(SRAREAD_LIBS) $(DATA_LOADERS_UTIL_LIB) $(OBJMGR_LIBS) |
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++ $(OBJEDIT_LIBS) $(XFORMAT_LIBS) $(BLAST_LIBS) taxon1 id2cli \ |
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++ xregexp $(PCRE_LIB) xqueryparse $(DATA_LOADERS_UTIL_LIB) $(OBJMGR_LIBS) |
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+ |
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+ LIBS = $(LIBXSLT_LIBS) $(DATA_LOADERS_UTIL_LIBS) $(LIBXML_LIBS) $(CMPRS_LIBS) $(PCRE_LIBS) \ |
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+ $(SRA_SDK_SYSLIBS) \ |
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|
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diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild |
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index 02426ab42..40db6cfa3 100644 |
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--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild |
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+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild |
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@@ -129,6 +129,7 @@ src_prepare() { |
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"${FILESDIR}"/${P}-fix-srcchk-linking.patch |
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"${FILESDIR}"/${P}-fix-app-rmblastn-linking.patch |
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"${FILESDIR}"/${P}-remove-old-symlinks.patch |
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+ "${FILESDIR}"/${P}-fix-app-table2asn-linking.patch |
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) |
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#ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch |
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epatch ${PATCHES[@]} |
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