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commit: 3b78eff2b8046466746871467e132507bcf8d013 |
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Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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AuthorDate: Mon Sep 21 17:25:05 2015 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Mon Sep 21 17:25:05 2015 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3b78eff2 |
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|
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sci-biology/samtools: Add subslot operators |
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|
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Package-Manager: portage-2.2.20.1 |
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Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
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|
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sci-biology/samtools/samtools-1.0-r2.ebuild | 8 ++++---- |
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sci-biology/samtools/samtools-1.1-r1.ebuild | 8 ++++---- |
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sci-biology/samtools/samtools-1.2-r1.ebuild | 8 ++++---- |
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3 files changed, 12 insertions(+), 12 deletions(-) |
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|
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diff --git a/sci-biology/samtools/samtools-1.0-r2.ebuild b/sci-biology/samtools/samtools-1.0-r2.ebuild |
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index d81f815..b10e681 100644 |
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--- a/sci-biology/samtools/samtools-1.0-r2.ebuild |
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+++ b/sci-biology/samtools/samtools-1.0-r2.ebuild |
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@@ -20,7 +20,7 @@ IUSE="examples" |
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REQUIRED_USE="${PYTHON_REQUIRED_USE}" |
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|
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CDEPEND=" |
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- sys-libs/ncurses |
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+ sys-libs/ncurses:0= |
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sci-libs/htslib" |
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|
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RDEPEND="${CDEPEND} |
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@@ -34,15 +34,15 @@ src_prepare() { |
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|
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sed -i 's~/software/bin/python~/usr/bin/env python~' "${S}"/misc/varfilter.py || die |
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|
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- epatch "${FILESDIR}"/${P}-buildsystem.patch |
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- epatch "${FILESDIR}"/${P}-rmdup.patch |
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+ epatch \ |
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+ "${FILESDIR}"/${P}-buildsystem.patch \ |
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+ "${FILESDIR}"/${P}-rmdup.patch |
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|
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tc-export CC AR |
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|
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sed \ |
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-e '/htslib.mk/d' \ |
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-i Makefile || die |
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- |
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} |
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|
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src_compile() { |
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|
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diff --git a/sci-biology/samtools/samtools-1.1-r1.ebuild b/sci-biology/samtools/samtools-1.1-r1.ebuild |
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index 0d65870..9941156 100644 |
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--- a/sci-biology/samtools/samtools-1.1-r1.ebuild |
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+++ b/sci-biology/samtools/samtools-1.1-r1.ebuild |
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@@ -20,7 +20,7 @@ IUSE="examples" |
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REQUIRED_USE="${PYTHON_REQUIRED_USE}" |
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|
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CDEPEND=" |
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- sys-libs/ncurses |
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+ sys-libs/ncurses:0= |
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~sci-libs/htslib-${PV}" |
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|
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RDEPEND="${CDEPEND} |
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@@ -34,15 +34,15 @@ src_prepare() { |
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|
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sed -i 's~/software/bin/python~/usr/bin/env python~' "${S}"/misc/varfilter.py || die |
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|
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- epatch "${FILESDIR}"/${P}-buildsystem.patch |
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- epatch "${FILESDIR}"/${P}-rmdup.patch |
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+ epatch \ |
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+ "${FILESDIR}"/${P}-buildsystem.patch \ |
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+ "${FILESDIR}"/${P}-rmdup.patch |
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|
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tc-export CC AR |
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|
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sed \ |
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-e '/htslib.mk/d' \ |
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-i Makefile || die |
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- |
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} |
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|
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src_compile() { |
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|
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diff --git a/sci-biology/samtools/samtools-1.2-r1.ebuild b/sci-biology/samtools/samtools-1.2-r1.ebuild |
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index 648032c..dcbd07b 100644 |
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--- a/sci-biology/samtools/samtools-1.2-r1.ebuild |
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+++ b/sci-biology/samtools/samtools-1.2-r1.ebuild |
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@@ -20,7 +20,7 @@ IUSE="examples" |
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REQUIRED_USE="${PYTHON_REQUIRED_USE}" |
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|
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CDEPEND=" |
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- sys-libs/ncurses |
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+ sys-libs/ncurses:0= |
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>=sci-libs/htslib-${PV}" |
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|
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RDEPEND="${CDEPEND} |
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@@ -34,15 +34,15 @@ src_prepare() { |
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|
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sed -i 's~/software/bin/python~/usr/bin/env python~' "${S}"/misc/varfilter.py || die |
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|
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- epatch "${FILESDIR}"/${P}-buildsystem.patch |
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- epatch "${FILESDIR}"/${P}-rmdup.patch |
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+ epatch \ |
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+ "${FILESDIR}"/${P}-buildsystem.patch \ |
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+ "${FILESDIR}"/${P}-rmdup.patch |
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|
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tc-export CC AR |
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|
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sed \ |
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-e '/htslib.mk/d' \ |
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-i Makefile || die |
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- |
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} |
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|
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src_compile() { |
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