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commit: ca02fa6f25e71ab9956a8fd21a9fa1ae80e1ff49 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Tue Jan 31 18:04:26 2017 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Tue Jan 31 18:04:26 2017 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ca02fa6f |
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sci-biology/repeatmasker: remove escaping backslashes so that the ebuild works again |
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Also drop the full paths from configure which otherwise needed EPREFIX mangling |
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Package-Manager: Portage-2.3.3, Repoman-2.3.1 |
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sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild | 16 ++++++++-------- |
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1 file changed, 8 insertions(+), 8 deletions(-) |
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diff --git a/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild b/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild |
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index 8155caa..a3ebd5a 100644 |
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--- a/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild |
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+++ b/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild |
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@@ -35,8 +35,8 @@ src_prepare(){ |
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} |
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|
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src_configure() { |
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- sed -e "s#/usr/bin/which#${EPREFIX}/usr/bin/which#g" -i "${S}"/configure || die |
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- sed -e "s#/usr/bin/perl#${EPREFIX}/usr/bin/perl#g" -i "${S}"/configure || die |
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+ sed -e "s#/usr/bin/which#which#g" -i "${S}"/configure || die |
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+ sed -e "s#/usr/bin/perl#perl#g" -i "${S}"/configure || die |
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perl_set_version |
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insinto ${VENDOR_LIB} |
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sed -e "s#/usr/perl5/lib/#${VENDOR_LIB}#g" -i "${S}"/configure || die |
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@@ -53,18 +53,18 @@ src_configure() { |
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# below try to define paths to trf, cross_match, rmblast and nhmmer as search tools |
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echo " |
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env |
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-\"${S}\" |
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-"${EPREFIX}"/opt/bin |
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+${S} |
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+${EPREFIX}/opt/trf/bin |
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1 |
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-"${EPREFIX}"/usr/bin |
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+${EPREFIX}/usr/bin |
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Y |
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2 |
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-"${EPREFIX}"/usr/bin |
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+${EPREFIX}/usr/bin |
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Y |
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4 |
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-"${EPREFIX}"/usr/bin |
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+${EPREFIX}/usr/bin |
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Y |
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-5" | "${S}/configure" || die "configure failed" |
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+5" | "${S}"/configure || die "configure failed" |
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sed -i -e "s|use lib $FindBin::RealBin;|use lib ${EPREFIX}/usr/share/${PN}/lib;|" \ |
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-e "s|.*\(taxonomy.dat\)|${EPREFIX}/usr/share/${PN}/Libraries/\1|" \ |
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-e "/$REPEATMASKER_DIR/ s|$FindBin::RealBin|${EPREFIX}/usr/share/${PN}|" \ |
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