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commit: 89b91efb19621ed16be8bf20cb05670120ec431d |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Wed Mar 30 14:23:32 2016 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Wed Mar 30 14:23:32 2016 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=89b91efb |
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|
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sci-biology/artemis: install docs, cleanup ebuild and bring it in sync with sci-biology/act-bin and sci-biology/artemis-9999 |
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|
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Package-Manager: portage-2.2.28 |
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|
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sci-biology/artemis/artemis-9999.ebuild | 19 ++++++++++++++----- |
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1 file changed, 14 insertions(+), 5 deletions(-) |
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|
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diff --git a/sci-biology/artemis/artemis-9999.ebuild b/sci-biology/artemis/artemis-9999.ebuild |
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index 81da9cb..d9e915d 100644 |
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--- a/sci-biology/artemis/artemis-9999.ebuild |
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+++ b/sci-biology/artemis/artemis-9999.ebuild |
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@@ -1,14 +1,15 @@ |
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-# Copyright 1999-2015 Gentoo Foundation |
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+# Copyright 1999-2016 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Id$ |
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|
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-EAPI=5 |
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+EAPI=6 |
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|
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inherit java-pkg-2 java-ant-2 git-r3 |
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|
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DESCRIPTION="DNA sequence viewer/annotation (Artemis) and comparison (ACT) tool" |
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HOMEPAGE="http://www.sanger.ac.uk/resources/software/artemis" |
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-SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.pdf" |
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+SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.pdf -> ${P}.manual.pdf |
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+ ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v16/art_html_build.zip -> ${P}.html_build.zip" |
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EGIT_REPO_URI="https://github.com/sanger-pathogens/Artemis" |
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|
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LICENSE="GPL-2" |
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@@ -41,6 +42,10 @@ DEPEND="${RDEPEND} |
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|
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# BamView is at http://bamview.sourceforge.net/ |
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|
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+src_unpack(){ |
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+ unzip "${DISTDIR}"/art_html_build.zip || die |
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+} |
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+ |
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src_compile(){ |
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ant || die |
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} |
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@@ -48,7 +53,9 @@ src_compile(){ |
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src_install(){ |
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dobin act act.command art dnaplotter gff2embl |
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java-pkg_dojar ant-build/artemis.jar |
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- dodoc "${DISTDIR}"/artemis.pdf README |
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+ dodoc "${DISTDIR}"/"${P}".manual.pdf README |
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+ insinto /usr/share/doc/"${PN}"/html |
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+ doins art_html_build/* |
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} |
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|
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# artemis_compiled_v16.0.11.tar.gz contains compiled binaries but also java *.class files |
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@@ -57,5 +64,7 @@ src_install(){ |
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|
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pkg_postinst(){ |
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einfo "For BAM file support please install sci-biology/BamView" |
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- einfo " from http://bamview.sourceforge.net" |
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+ einfo "You may find interesting the additional web resources:" |
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+ einfo "http://www.webact.org/WebACT" |
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+ einfo "http://www.hpa-bioinfotools.org.uk/pise/double_act.html" |
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} |
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