Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/maker/
Date: Wed, 30 Dec 2015 19:16:29
Message-Id: 1451502905.389c7dcdd5a39c1bb6748d52d49bb61981258dfd.mmokrejs@gentoo
1 commit: 389c7dcdd5a39c1bb6748d52d49bb61981258dfd
2 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
3 AuthorDate: Wed Dec 30 19:15:05 2015 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Wed Dec 30 19:15:05 2015 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=389c7dcd
7
8 sci-biology/maker: do install from a top-level directory; there is a file collision with /usr/bin/compare from media-gfx/imagemagick and with /usr/bin/fasta_tool from sci-biology/trinityrnaseq
9
10 Package-Manager: portage-2.2.26
11
12 sci-biology/maker/ChangeLog | 5 +++++
13 sci-biology/maker/maker-2.31.8.ebuild | 1 +
14 2 files changed, 6 insertions(+)
15
16 diff --git a/sci-biology/maker/ChangeLog b/sci-biology/maker/ChangeLog
17 index 2befe1a..16cf654 100644
18 --- a/sci-biology/maker/ChangeLog
19 +++ b/sci-biology/maker/ChangeLog
20 @@ -3,6 +3,11 @@
21 # $Id$
22
23 30 Dec 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> maker-2.31.8.ebuild:
24 + sci-biology/maker: do install from a top-level directory; there is a file
25 + collision with /usr/bin/compare from media-gfx/imagemagick and with
26 + /usr/bin/fasta_tool from sci-biology/trinityrnaseq
27 +
28 + 30 Dec 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> maker-2.31.8.ebuild:
29 sci-biology/maker: added openmpi as dependency; define our own src_install();
30 add einfo message; added dev-perl/forks-shared dependency
31
32
33 diff --git a/sci-biology/maker/maker-2.31.8.ebuild b/sci-biology/maker/maker-2.31.8.ebuild
34 index b631293..bb0dba6 100644
35 --- a/sci-biology/maker/maker-2.31.8.ebuild
36 +++ b/sci-biology/maker/maker-2.31.8.ebuild
37 @@ -102,6 +102,7 @@ src_compile(){
38 }
39
40 src_install(){
41 + cd "${WORKDIR}"/maker || die
42 dobin bin/*
43 dodoc README INSTALL
44 insinto /usr/share/"{PN}"/GMOD/Apollo