[gentoo-commits] proj/sci:master commit in: sci-biology/stampy/

[Martin Mokrejs]

commit:     e48ef93babd11710d0e39fdea396cbd12f594968
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jul 15 13:13:31 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul 15 13:13:31 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e48ef93b

sci-biology/stampy: new package; installs into wrong PYTHON library path

Package-Manager: portage-2.2.28

 sci-biology/stampy/metadata.xml         | 12 ++++++++++++
 sci-biology/stampy/stampy-1.0.28.ebuild | 30 ++++++++++++++++++++++++++++++
 2 files changed, 42 insertions(+)

diff --git a/sci-biology/stampy/metadata.xml b/sci-biology/stampy/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/stampy/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@g.o</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/stampy/stampy-1.0.28.ebuild b/sci-biology/stampy/stampy-1.0.28.ebuild
new file mode 100644
index 0000000..c820e6a
--- /dev/null
+++ b/sci-biology/stampy/stampy-1.0.28.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit toolchain-funcs
+
+DESCRIPTION="Map highly divergent short reads to a reference"
+HOMEPAGE="http://www.well.ox.ac.uk/project-stampy"
+SRC_URI="${P}.tar.gz"
+
+LICENSE="stampy-academic"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+RESTRICT="fetch"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_install(){
+	dobin *.py
+	local dest=/usr/$(get_libdir) # FIXME: still not correct
+	insinto "${dest}"
+	doins maptools.so
+	fperms a+x ${dest}/maptools.so
+	dodoc README.txt
+}