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jlec 12/08/26 16:03:01 |
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|
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Modified: ChangeLog |
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Added: meme-4.8.1.ebuild |
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Log: |
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sci-biology/meme: Version Bump; respect CFLAGS, #430774 |
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|
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(Portage version: 2.2.0_alpha122/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.18 sci-biology/meme/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/ChangeLog?rev=1.18&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/ChangeLog?rev=1.18&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/ChangeLog?r1=1.17&r2=1.18 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v |
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retrieving revision 1.17 |
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retrieving revision 1.18 |
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diff -u -r1.17 -r1.18 |
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--- ChangeLog 2 Mar 2011 17:41:09 -0000 1.17 |
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+++ ChangeLog 26 Aug 2012 16:03:01 -0000 1.18 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-biology/meme |
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-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.17 2011/03/02 17:41:09 jlec Exp $ |
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+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.18 2012/08/26 16:03:01 jlec Exp $ |
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+ |
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+*meme-4.8.1 (26 Aug 2012) |
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+ |
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+ 26 Aug 2012; Justin Lecher <jlec@g.o> +meme-4.8.1.ebuild, |
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+ +files/meme-4.8.1-Makefile.am.patch: |
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+ Version Bump; respect CFLAGS, #430774 |
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|
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02 Mar 2011; Justin Lecher <jlec@g.o> meme-4.3.0.ebuild, |
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meme-4.3.0-r1.ebuild, meme-4.4.0.ebuild: |
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|
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|
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|
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1.1 sci-biology/meme/meme-4.8.1.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/meme-4.8.1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/meme-4.8.1.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: meme-4.8.1.ebuild |
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=================================================================== |
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## Copyright 1999-2011 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-4.8.1.ebuild,v 1.1 2012/08/26 16:03:01 jlec Exp $ |
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|
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EAPI=4 |
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|
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PYTHON_DEPEND="2" |
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|
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inherit autotools eutils python |
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|
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DESCRIPTION="The MEME/MAST system - Motif discovery and search" |
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HOMEPAGE="http://meme.sdsc.edu/meme" |
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SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz" |
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|
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LICENSE="meme" |
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SLOT="0" |
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KEYWORDS="~amd64 ~x86" |
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IUSE="debug mpi" |
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|
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DEPEND=" |
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dev-libs/libxml2:2 |
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dev-libs/libxslt |
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app-shells/tcsh |
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mpi? ( virtual/mpi )" |
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RDEPEND="${DEPEND}" |
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|
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S="${WORKDIR}/${PN}_${PV}" |
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|
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#pkg_setup() { |
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# generate meme group to restrict logging to /var/log/meme |
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# enewgroup meme |
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# python_pkg_setup |
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# python_set_active_version 2 |
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#} |
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|
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src_prepare() { |
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sed \ |
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-e '/flags/s:-O3::g' \ |
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-e '/opt/s:-O::g' \ |
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-e '/debug/s:-ggdb::' \ |
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-e '/debug/s:-g::' \ |
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-e 's:CFLAGS=:CFLAGS+=:g' \ |
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-i configure.ac || die |
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epatch \ |
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"${FILESDIR}"/${P}-Makefile.am.patch |
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eautoreconf |
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} |
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|
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src_configure() { |
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MY_PREFIX="${ROOT}opt/meme" |
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USE_DISABLE_MPI=""; if ! use mpi; then USE_DISABLE_MPI="--enable-serial"; fi |
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econf \ |
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--sysconfdir="${EPREFIX}/etc/meme" \ |
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--with-logs="${ROOT}var/log/meme" \ |
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$(use_enable debug) \ |
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$USE_DISABLE_MPI |
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} |
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|
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src_test() { |
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# bug #297070 |
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emake -j1 test || die "Regression tests failed." |
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} |
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|
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src_install() { |
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emake install DESTDIR="${D}" |
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|
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echo "PATH=/opt/${PN}/bin" > 99${PN} |
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doenvd 99${PN} |
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|
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# allow logging only for members of meme group |
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# diropts -m 0770 -g meme -o root |
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diropts -m ugo+rwxt -o root |
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keepdir /var/log/meme |
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} |
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|
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#pkg_postinst() { |
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# einfo 'Log files are produced in the "/var/log/meme" directory. Users' |
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# einfo 'need to be part of the meme group to use this facility.' |
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#} |
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