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weaver 12/09/30 17:17:22 |
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|
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Modified: ChangeLog |
| 4 |
Added: gatk-1.6.ebuild |
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Removed: gatk-1.4.ebuild gatk-1.5.ebuild |
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Log: |
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Version bump, remove old, add git dep |
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|
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(Portage version: 2.2.0_alpha134/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.5 sci-biology/gatk/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gatk/ChangeLog?rev=1.5&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gatk/ChangeLog?rev=1.5&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gatk/ChangeLog?r1=1.4&r2=1.5 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/gatk/ChangeLog,v |
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retrieving revision 1.4 |
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retrieving revision 1.5 |
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diff -u -r1.4 -r1.5 |
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--- ChangeLog 7 Apr 2012 23:32:18 -0000 1.4 |
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+++ ChangeLog 30 Sep 2012 17:17:21 -0000 1.5 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-biology/gatk |
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# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/ChangeLog,v 1.4 2012/04/07 23:32:18 weaver Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/ChangeLog,v 1.5 2012/09/30 17:17:21 weaver Exp $ |
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+ |
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+*gatk-1.6 (30 Sep 2012) |
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+ |
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+ 30 Sep 2012; Andrey Kislyuk <weaver@g.o> -gatk-1.4.ebuild, |
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+ -gatk-1.5.ebuild, +gatk-1.6.ebuild: |
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+ Version bump, remove old, add git dep |
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|
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*gatk-1.5 (07 Apr 2012) |
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|
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|
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|
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1.1 sci-biology/gatk/gatk-1.6.ebuild |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gatk/gatk-1.6.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gatk/gatk-1.6.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: gatk-1.6.ebuild |
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=================================================================== |
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# Copyright 1999-2012 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-1.6.ebuild,v 1.1 2012/09/30 17:17:21 weaver Exp $ |
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|
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EAPI=4 |
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|
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MY_HASH=93333f0 |
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|
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EGIT_REPO_URI="https://github.com/broadgsa/gatk.git" |
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|
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EANT_BUILD_TARGET="dist" |
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EANT_NEEDS_TOOLS="true" |
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JAVA_ANT_REWRITE_CLASSPATH="true" |
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|
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#inherit java-pkg-2 java-ant-2 git |
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inherit java-pkg-2 java-ant-2 |
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|
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DESCRIPTION="The Genome Analysis Toolkit" |
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HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" |
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SRC_URI="https://github.com/broadgsa/gatk/tarball/${PV} -> ${P}.tar.gz" |
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|
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LICENSE="as-is" |
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SLOT="0" |
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IUSE="" |
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KEYWORDS="~amd64" |
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|
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COMMON_DEPS="" |
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DEPEND=">=virtual/jdk-1.6 |
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dev-vcs/git |
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${COMMON_DEPS}" |
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RDEPEND=">=virtual/jre-1.6 |
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${COMMON_DEPS}" |
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|
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S="${WORKDIR}/broadgsa-gatk-${MY_HASH}" |
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|
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src_prepare() { |
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sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die |
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java-pkg-2_src_prepare |
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} |
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|
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src_install() { |
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java-pkg_dojar dist/*.jar |
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java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar |
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java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar |
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} |
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