[gentoo-commits] gentoo-x86 commit in sci-biology/samtools: samtools-0.1.18.ebuild ChangeLog

[Andrey Kislyuk (weaver)]

weaver      11/09/26 15:18:39

  Modified:             ChangeLog
  Added:                samtools-0.1.18.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.0_alpha45/cvs/Linux x86_64)

Revision  Changes    Path
1.8                  sci-biology/samtools/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?rev=1.8&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?rev=1.8&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?r1=1.7&r2=1.8

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -r1.7 -r1.8
--- ChangeLog	18 Jul 2011 01:50:51 -0000	1.7
+++ ChangeLog	26 Sep 2011 15:18:39 -0000	1.8
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/samtools
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.7 2011/07/18 01:50:51 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.8 2011/09/26 15:18:39 weaver Exp $
+
+*samtools-0.1.18 (26 Sep 2011)
+
+  26 Sep 2011; Andrey Kislyuk <weaver@g.o> +samtools-0.1.18.ebuild:
+  Version bump
 
 *samtools-0.1.17 (18 Jul 2011)
 



1.1                  sci-biology/samtools/samtools-0.1.18.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/samtools-0.1.18.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/samtools-0.1.18.ebuild?rev=1.1&content-type=text/plain

Index: samtools-0.1.18.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-0.1.18.ebuild,v 1.1 2011/09/26 15:18:39 weaver Exp $

EAPI=4

inherit multilib toolchain-funcs

DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments"
HOMEPAGE="http://samtools.sourceforge.net/"
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"

LICENSE="MIT"
SLOT="0"
IUSE="examples"
KEYWORDS="~amd64 ~x86 ~x64-macos"

src_prepare() {
	sed \
		-e '/^CFLAGS=/d' \
		-e "s/\$(CC) \$(CFLAGS)/& \$(LDFLAGS)/g" \
		-e "s/-shared/& \$(LDFLAGS)/" \
		-i "${S}"/{Makefile,misc/Makefile} || die #358563
	sed -i 's~/software/bin/python~/usr/bin/env python~' "${S}"/misc/varfilter.py || die
}

src_compile() {
	emake CC="$(tc-getCC)" dylib || die
	emake CC="$(tc-getCC)" || die
}

src_install() {
	dobin samtools $(find misc -type f -executable)

	dolib.so libbam.so.1
	dosym libbam.so.1 /usr/$(get_libdir)/libbam.so

	insinto /usr/include/bam
	doins bam.h bgzf.h faidx.h kaln.h khash.h kprobaln.h kseq.h ksort.h sam.h

	doman ${PN}.1
	dodoc AUTHORS ChangeLog NEWS

	if use examples; then
		insinto /usr/share/${PN}
		doins -r examples
	fi
}