| 1 |
commit: 71cdc2ea8a2ce9b5fbf6aaf315c1d7c7016805b9 |
| 2 |
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 3 |
AuthorDate: Sun Apr 1 20:46:38 2018 +0000 |
| 4 |
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 5 |
CommitDate: Sun Apr 1 20:46:38 2018 +0000 |
| 6 |
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=71cdc2ea |
| 7 |
|
| 8 |
sci-biology/diamond: new package |
| 9 |
|
| 10 |
Do not know if the SSE instruction calls can be protected |
| 11 |
with CPU_FLAGS or similar. See page 2 in diamond_manual.pdf . |
| 12 |
|
| 13 |
Package-Manager: Portage-2.3.27, Repoman-2.3.9 |
| 14 |
|
| 15 |
sci-biology/diamond/diamond-0.9.19.ebuild | 27 +++++++++++++++++++++++++++ |
| 16 |
sci-biology/diamond/metadata.xml | 12 ++++++++++++ |
| 17 |
2 files changed, 39 insertions(+) |
| 18 |
|
| 19 |
diff --git a/sci-biology/diamond/diamond-0.9.19.ebuild b/sci-biology/diamond/diamond-0.9.19.ebuild |
| 20 |
new file mode 100644 |
| 21 |
index 000000000..fde9b9080 |
| 22 |
--- /dev/null |
| 23 |
+++ b/sci-biology/diamond/diamond-0.9.19.ebuild |
| 24 |
@@ -0,0 +1,27 @@ |
| 25 |
+# Copyright 1999-2018 Gentoo Foundation |
| 26 |
+# Distributed under the terms of the GNU General Public License v2 |
| 27 |
+ |
| 28 |
+EAPI=6 |
| 29 |
+ |
| 30 |
+inherit toolchain-funcs cmake-utils |
| 31 |
+ |
| 32 |
+DESCRIPTION="Alternative of blastp/blastx searches using DNA short reads through protein db" |
| 33 |
+HOMEPAGE="http://ab.inf.uni-tuebingen.de/software/diamond |
| 34 |
+ https://github.com/bbuchfink/diamond" |
| 35 |
+SRC_URI="https://github.com/bbuchfink/diamond/archive/v${PV}.tar.gz" |
| 36 |
+# EGIT_REPO_URI="https://github.com/bbuchfink/diamond.git" |
| 37 |
+ |
| 38 |
+LICENSE="AGPL-3" # diamond_manual.pdf says AGPL but src/COPYING used to say BSD? |
| 39 |
+SLOT="0" |
| 40 |
+KEYWORDS="~amd64 ~x86" |
| 41 |
+IUSE="" |
| 42 |
+# uses SSE instructions, SSSE3 and POPCNT |
| 43 |
+ |
| 44 |
+DEPEND="" |
| 45 |
+RDEPEND="${DEPEND}" |
| 46 |
+ |
| 47 |
+# use cmake -DBUILD_STATIC=ON to create a statically linked binary |
| 48 |
+src_install(){ |
| 49 |
+ cmake-utils_src_install |
| 50 |
+ dodoc README.rst diamond_manual.pdf |
| 51 |
+} |
| 52 |
|
| 53 |
diff --git a/sci-biology/diamond/metadata.xml b/sci-biology/diamond/metadata.xml |
| 54 |
new file mode 100644 |
| 55 |
index 000000000..138cb7705 |
| 56 |
--- /dev/null |
| 57 |
+++ b/sci-biology/diamond/metadata.xml |
| 58 |
@@ -0,0 +1,12 @@ |
| 59 |
+<?xml version="1.0" encoding="UTF-8"?> |
| 60 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 61 |
+<pkgmetadata> |
| 62 |
+ <maintainer type="person"> |
| 63 |
+ <email>mmokrejs@×××××××××××××××.cz</email> |
| 64 |
+ <name>Martin Mokrejs</name> |
| 65 |
+ </maintainer> |
| 66 |
+ <maintainer type="project"> |
| 67 |
+ <email>sci-biology@g.o</email> |
| 68 |
+ <name>Gentoo Biology Project</name> |
| 69 |
+ </maintainer> |
| 70 |
+</pkgmetadata> |
Archives