| 1 |
jlec 13/05/24 16:45:31 |
| 2 |
|
| 3 |
Modified: ChangeLog |
| 4 |
Added: ccp4-libs-6.1.3-r13.ebuild |
| 5 |
Log: |
| 6 |
sci-libs/ccp4-libs: Drop CLIB and CLIBS from env, #414913 |
| 7 |
|
| 8 |
(Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916) |
| 9 |
|
| 10 |
Revision Changes Path |
| 11 |
1.56 sci-libs/ccp4-libs/ChangeLog |
| 12 |
|
| 13 |
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/ccp4-libs/ChangeLog?rev=1.56&view=markup |
| 14 |
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/ccp4-libs/ChangeLog?rev=1.56&content-type=text/plain |
| 15 |
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/ccp4-libs/ChangeLog?r1=1.55&r2=1.56 |
| 16 |
|
| 17 |
Index: ChangeLog |
| 18 |
=================================================================== |
| 19 |
RCS file: /var/cvsroot/gentoo-x86/sci-libs/ccp4-libs/ChangeLog,v |
| 20 |
retrieving revision 1.55 |
| 21 |
retrieving revision 1.56 |
| 22 |
diff -u -r1.55 -r1.56 |
| 23 |
--- ChangeLog 3 May 2013 16:19:50 -0000 1.55 |
| 24 |
+++ ChangeLog 24 May 2013 16:45:30 -0000 1.56 |
| 25 |
@@ -1,6 +1,11 @@ |
| 26 |
# ChangeLog for sci-libs/ccp4-libs |
| 27 |
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
| 28 |
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/ccp4-libs/ChangeLog,v 1.55 2013/05/03 16:19:50 jlec Exp $ |
| 29 |
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/ccp4-libs/ChangeLog,v 1.56 2013/05/24 16:45:30 jlec Exp $ |
| 30 |
+ |
| 31 |
+*ccp4-libs-6.1.3-r13 (24 May 2013) |
| 32 |
+ |
| 33 |
+ 24 May 2013; Justin Lecher <jlec@g.o> +ccp4-libs-6.1.3-r13.ebuild: |
| 34 |
+ Drop CLIB and CLIBS from env, #414913 |
| 35 |
|
| 36 |
*ccp4-libs-6.1.3-r12 (03 May 2013) |
| 37 |
|
| 38 |
|
| 39 |
|
| 40 |
|
| 41 |
1.1 sci-libs/ccp4-libs/ccp4-libs-6.1.3-r13.ebuild |
| 42 |
|
| 43 |
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/ccp4-libs/ccp4-libs-6.1.3-r13.ebuild?rev=1.1&view=markup |
| 44 |
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/ccp4-libs/ccp4-libs-6.1.3-r13.ebuild?rev=1.1&content-type=text/plain |
| 45 |
|
| 46 |
Index: ccp4-libs-6.1.3-r13.ebuild |
| 47 |
=================================================================== |
| 48 |
# Copyright 1999-2013 Gentoo Foundation |
| 49 |
# Distributed under the terms of the GNU General Public License v2 |
| 50 |
# $Header: /var/cvsroot/gentoo-x86/sci-libs/ccp4-libs/ccp4-libs-6.1.3-r13.ebuild,v 1.1 2013/05/24 16:45:31 jlec Exp $ |
| 51 |
|
| 52 |
EAPI=5 |
| 53 |
|
| 54 |
PYTHON_COMPAT=( python{2_6,2_7} ) |
| 55 |
|
| 56 |
inherit autotools eutils fortran-2 gnuconfig multilib python-single-r1 toolchain-funcs |
| 57 |
|
| 58 |
SRC="ftp://ftp.ccp4.ac.uk/ccp4" |
| 59 |
|
| 60 |
#UPDATE="04_03_09" |
| 61 |
#PATCHDATE="090511" |
| 62 |
|
| 63 |
MY_P="${P/-libs}" |
| 64 |
|
| 65 |
PATCH_TOT="0" |
| 66 |
|
| 67 |
DESCRIPTION="Protein X-ray crystallography toolkit - Libraries" |
| 68 |
HOMEPAGE="http://www.ccp4.ac.uk/" |
| 69 |
SRC_URI="${SRC}/${PV}/${MY_P}-core-src.tar.gz" |
| 70 |
# patch tarball from upstream |
| 71 |
[[ -n ${UPDATE} ]] && SRC_URI="${SRC_URI} ${SRC}/${PV}/updates/${P}-src-patch-${UPDATE}.tar.gz" |
| 72 |
# patches created by us |
| 73 |
[[ -n ${PATCHDATE} ]] && SRC_URI="${SRC_URI} http://dev.gentooexperimental.org/~jlec/science-dist/${PV}-${PATCHDATE}-updates.patch.bz2" |
| 74 |
|
| 75 |
for i in $(seq $PATCH_TOT); do |
| 76 |
NAME="PATCH${i}[1]" |
| 77 |
SRC_URI="${SRC_URI} |
| 78 |
${SRC}/${PV}/patches/${!NAME}" |
| 79 |
done |
| 80 |
|
| 81 |
LICENSE="ccp4" |
| 82 |
SLOT="0" |
| 83 |
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" |
| 84 |
IUSE="" |
| 85 |
|
| 86 |
RDEPEND=" |
| 87 |
!<sci-chemistry/ccp4-6.1.3 |
| 88 |
!<sci-chemistry/ccp4-apps-${PV}-r10 |
| 89 |
app-shells/tcsh |
| 90 |
dev-lang/tcl |
| 91 |
>=sci-libs/cbflib-0.9.2.2 |
| 92 |
sci-libs/fftw:2.1 |
| 93 |
sci-libs/mmdb |
| 94 |
sci-libs/monomer-db |
| 95 |
sci-libs/ssm |
| 96 |
virtual/jpeg |
| 97 |
virtual/lapack |
| 98 |
virtual/blas" |
| 99 |
DEPEND="${RDEPEND} |
| 100 |
virtual/pkgconfig" |
| 101 |
|
| 102 |
S="${WORKDIR}/${MY_P}" |
| 103 |
|
| 104 |
MAKEOPTS+=" -j1" |
| 105 |
|
| 106 |
pkg_setup() { |
| 107 |
fortran-2_pkg_setup |
| 108 |
python-single-r1_pkg_setup |
| 109 |
} |
| 110 |
|
| 111 |
src_prepare() { |
| 112 |
tc-export PKG_CONFIG RANLIB AR |
| 113 |
|
| 114 |
sed \ |
| 115 |
-e "/^AR/s:ar:$(tc-getAR):g" \ |
| 116 |
-i lib/src/Makefile.in src/Makefile.in src/ccp4mapwish_/Makefile.in lib/ccif/Makefile.in || die |
| 117 |
|
| 118 |
einfo "Applying upstream patches ..." |
| 119 |
for patch in $(seq $PATCH_TOT); do |
| 120 |
base="PATCH${patch}" |
| 121 |
dir=$(eval echo \${${base}[0]}) |
| 122 |
p=$(eval echo \${${base}[1]}) |
| 123 |
pushd "${dir}" >& /dev/null |
| 124 |
ccp_patch "${DISTDIR}/${p}" |
| 125 |
popd >& /dev/null |
| 126 |
done |
| 127 |
einfo "Done." |
| 128 |
echo |
| 129 |
|
| 130 |
[[ -n ${PATCHDATE} ]] && epatch "${WORKDIR}"/${PV}-${PATCHDATE}-updates.patch |
| 131 |
|
| 132 |
einfo "Applying Gentoo patches ..." |
| 133 |
# fix buffer overflows wrt bug 339706 |
| 134 |
ccp_patch "${FILESDIR}"/${PV}-overflows.patch |
| 135 |
|
| 136 |
# it tries to create libdir, bindir etc on live system in configure |
| 137 |
ccp_patch "${FILESDIR}"/${PV}-dont-make-dirs-in-configure.patch |
| 138 |
|
| 139 |
# gerror_ gets defined twice on ppc if you're using gfortran/g95 |
| 140 |
ccp_patch "${FILESDIR}"/6.0.2-ppc-double-define-gerror.patch |
| 141 |
|
| 142 |
# make creation of libccif.so smooth |
| 143 |
ccp_patch "${FILESDIR}"/${PV}-ccif-shared.patch |
| 144 |
|
| 145 |
# lets try to build libmmdb seperatly |
| 146 |
ccp_patch "${FILESDIR}"/${PV}-dont-build-mmdb.patch |
| 147 |
|
| 148 |
# unbundle libjpeg and cbflib |
| 149 |
ccp_patch "${FILESDIR}"/${PV}-unbundle-libs-ng2.patch |
| 150 |
|
| 151 |
# Fix missing DESTIDR |
| 152 |
# not installing during build |
| 153 |
ccp_patch "${FILESDIR}"/${PV}-noinstall.patch |
| 154 |
sed \ |
| 155 |
-e '/SHARE_INST/s:$(libdir):$(DESTDIR)/$(libdir):g' \ |
| 156 |
-i configure || die |
| 157 |
|
| 158 |
# Fix upstreams code |
| 159 |
ccp_patch "${FILESDIR}"/${PV}-impl-dec.patch |
| 160 |
|
| 161 |
# use pkg-config to detect BLAS/LAPACK |
| 162 |
ccp_patch "${FILESDIR}"/${PV}-lapack.patch |
| 163 |
|
| 164 |
# proto type changing in version 0.9.2.2 |
| 165 |
ccp_patch "${FILESDIR}"/${PV}-cbf.patch |
| 166 |
|
| 167 |
# proto type changing in version 0.9.2.2 |
| 168 |
ccp_patch "${FILESDIR}"/${PV}-no-pypath.patch |
| 169 |
|
| 170 |
einfo "Done." # done applying Gentoo patches |
| 171 |
echo |
| 172 |
|
| 173 |
# not needed, we have it extra |
| 174 |
rm -rf src/rapper/{libxml2,gc7.0} || die |
| 175 |
|
| 176 |
sed \ |
| 177 |
-e "s:/usr:${EPREFIX}/usr:g" \ |
| 178 |
-e 's:-Wl,-rpath,$CLIB::g' \ |
| 179 |
-e 's: -rpath $CLIB::g' \ |
| 180 |
-e 's: -I${srcdir}/include/cpp_c_headers::g' \ |
| 181 |
-e 's:sleep 1:sleep .2:g' \ |
| 182 |
-i configure || die |
| 183 |
|
| 184 |
gnuconfig_update |
| 185 |
|
| 186 |
for i in lib/DiffractionImage src/rapper src/pisa; do |
| 187 |
pushd ${i} > /dev/null |
| 188 |
sed 's:-g::g' -i configure* || die |
| 189 |
eautoreconf |
| 190 |
popd > /dev/null |
| 191 |
done |
| 192 |
|
| 193 |
## unbundle libssm |
| 194 |
sed -e '/libdir/s:ssm::g' -i Makefile.in || die |
| 195 |
find ./lib/src/mmdb ./lib/ssm ./lib/clipper ./lib/fftw lib/lapack -delete || die |
| 196 |
} |
| 197 |
|
| 198 |
src_configure() { |
| 199 |
rm -rf lib/DiffractionImage/{jpg,CBFlib} || die |
| 200 |
|
| 201 |
# Build system is broken if we set LDFLAGS |
| 202 |
userldflags="${LDFLAGS}" |
| 203 |
export SHARED_LIB_FLAGS="${LDFLAGS}" |
| 204 |
unset LDFLAGS |
| 205 |
|
| 206 |
# GENTOO_OSNAME can be one of: |
| 207 |
# irix irix64 sunos sunos64 aix hpux osf1 linux freebsd |
| 208 |
# linux_compaq_compilers linux_intel_compilers generic Darwin |
| 209 |
# ia64_linux_intel Darwin_ibm_compilers linux_ibm_compilers |
| 210 |
if [[ "$(tc-getFC)" = "ifort" ]]; then |
| 211 |
if use ia64; then |
| 212 |
GENTOO_OSNAME="ia64_linux_intel" |
| 213 |
else |
| 214 |
# Should be valid for x86, maybe amd64 |
| 215 |
GENTOO_OSNAME="linux_intel_compilers" |
| 216 |
fi |
| 217 |
else |
| 218 |
# Should be valid for x86 and amd64, at least |
| 219 |
GENTOO_OSNAME="linux" |
| 220 |
fi |
| 221 |
|
| 222 |
# Sets up env |
| 223 |
ln -s \ |
| 224 |
ccp4.setup-bash \ |
| 225 |
"${S}"/include/ccp4.setup || die |
| 226 |
|
| 227 |
# We agree to the license by emerging this, set in LICENSE |
| 228 |
sed -i \ |
| 229 |
-e "s~^\(^agreed=\).*~\1yes~g" \ |
| 230 |
"${S}"/configure || die |
| 231 |
|
| 232 |
# Fix up variables -- need to reset CCP4_MASTER at install-time |
| 233 |
sed -i \ |
| 234 |
-e "s~^\(setenv CCP4_MASTER.*\)/.*~\1${WORKDIR}~g" \ |
| 235 |
-e "s~^\(export CCP4_MASTER.*\)/.*~\1${WORKDIR}~g" \ |
| 236 |
-e "s~^\(.*export CBIN=.*\)\$CCP4.*~\1\$CCP4/libexec/ccp4/bin/~g" \ |
| 237 |
-e "s~^\(.*setenv CBIN .*\)\$CCP4.*~\1\$CCP4/libexec/ccp4/bin/~g" \ |
| 238 |
-e "s~^\(setenv CCP4I_TCLTK.*\)/usr/local/bin~\1${EPREFIX}/usr/bin~g" \ |
| 239 |
"${S}"/include/ccp4.setup* || die |
| 240 |
|
| 241 |
# Set up variables for build |
| 242 |
source "${S}"/include/ccp4.setup-sh |
| 243 |
|
| 244 |
export CC=$(tc-getCC) |
| 245 |
export CXX=$(tc-getCXX) |
| 246 |
export COPTIM=${CFLAGS} |
| 247 |
export CXXOPTIM=${CXXFLAGS} |
| 248 |
# Default to -O2 if FFLAGS is unset |
| 249 |
export FC=$(tc-getFC) |
| 250 |
export FOPTIM=${FFLAGS:- -O2} |
| 251 |
|
| 252 |
export SHARE_LIB="\ |
| 253 |
$(tc-getCC) ${userldflags} -shared -Wl,-soname,libccp4c.so -o libccp4c.so \${CORELIBOBJS} \${CGENERALOBJS} \${CUCOBJS} \${CMTZOBJS} \${CMAPOBJS} \${CSYMOBJS} -L../ccif/ -lccif $(gcc-config -L | awk -F: '{for(i=1; i<=NF; i++) printf " -L%s", $i}') -lm && \ |
| 254 |
$(tc-getFC) ${userldflags} -shared -Wl,-soname,libccp4f.so -o libccp4f.so \${FORTRANLOBJS} \${FINTERFACEOBJS} -L../ccif/ -lccif -L. -lccp4c $($(tc-getPKG_CONFIG) --libs mmdb) $(gcc-config -L | awk -F: '{for(i=1; i<=NF; i++) printf " -L%s", $i}') -lstdc++ -lgfortran -lm" |
| 255 |
|
| 256 |
# Can't use econf, configure rejects unknown options like --prefix |
| 257 |
./configure \ |
| 258 |
--onlylibs \ |
| 259 |
--with-shared-libs \ |
| 260 |
--with-fftw="${EPREFIX}/usr" \ |
| 261 |
--with-warnings \ |
| 262 |
--disable-cctbx \ |
| 263 |
--disable-clipper \ |
| 264 |
--disable-ssm \ |
| 265 |
--tmpdir="${TMPDIR}" \ |
| 266 |
--bindir="${EPREFIX}/usr/libexec/ccp4/bin/" \ |
| 267 |
--libdir="${EPREFIX}/usr/$(get_libdir)" \ |
| 268 |
${GENTOO_OSNAME} || die "configure failed" |
| 269 |
} |
| 270 |
|
| 271 |
src_compile() { |
| 272 |
emake DESTDIR="${D}" onlylib |
| 273 |
} |
| 274 |
|
| 275 |
src_install() { |
| 276 |
# Set up variables for build |
| 277 |
source "${S}"/include/ccp4.setup-sh |
| 278 |
|
| 279 |
emake \ |
| 280 |
DESTDIR="${D}" \ |
| 281 |
includedir="${EPREFIX}/usr/include" \ |
| 282 |
library_includedir="${EPREFIX}/usr/include" \ |
| 283 |
install |
| 284 |
|
| 285 |
sed \ |
| 286 |
-e "330,1000d" \ |
| 287 |
-i "${S}"/include/ccp4.setup-sh || die |
| 288 |
|
| 289 |
sed \ |
| 290 |
-e "378,1000d" \ |
| 291 |
-i "${S}"/include/ccp4.setup-csh || die |
| 292 |
|
| 293 |
sed \ |
| 294 |
-e "s:-${PV/-r*/}::g" \ |
| 295 |
-e "s:^\(.*export CCP4_MASTER=\).*:\1${EPREFIX}/usr:g" \ |
| 296 |
-e "s:^\(.*setenv CCP4_MASTER\).*:\1 ${EPREFIX}/usr:g" \ |
| 297 |
-e "s:^\(.*export CCP4=\).*CCP4_MASTER.*:\1${EPREFIX}/usr:g" \ |
| 298 |
-e "s:^\(.*setenv CCP4\).*CCP4_MASTER.*:\1 ${EPREFIX}/usr:g" \ |
| 299 |
-e "s:^\(.*export CCP4_SCR=\).*:\1${EPREFIX}/tmp:g" \ |
| 300 |
-e "s:^\(.*setenv CCP4_SCR \).*:\1${EPREFIX}/tmp:g" \ |
| 301 |
-e "s:^\(.*export BINSORT_SCR=\).*:\1${EPREFIX}/tmp:g" \ |
| 302 |
-e "s:^\(.*setenv BINSORT_SCR \).*:\1${EPREFIX}/tmp:g" \ |
| 303 |
-e "s:^\(.*export CCP4I_TOP=\).*:\1${EPREFIX}/usr/$(get_libdir)/ccp4/ccp4i:g" \ |
| 304 |
-e "s:^\(.*setenv CCP4I_TOP \).*:\1${EPREFIX}/usr/$(get_libdir)/ccp4/ccp4i:g" \ |
| 305 |
-e "s:^\(.*export CCP4I_TCLTK=\).*:\1${EPREFIX}/usr/bin:g" \ |
| 306 |
-e "s:^\(.*setenv CCP4I_TCLTK \).*:\1${EPREFIX}/usr/bin:g" \ |
| 307 |
-e "s:^\(.*export CCP4I_HELP=\).*:\1${EPREFIX}/usr/$(get_libdir)/ccp4/ccp4i/help:g" \ |
| 308 |
-e "s:^\(.*setenv CCP4I_HELP \).*:\1${EPREFIX}/usr/$(get_libdir)/ccp4/ccp4i/help:g" \ |
| 309 |
-e "s:^\(.*export CBIN=\).*:\1${EPREFIX}/usr/libexec/ccp4/bin:g" \ |
| 310 |
-e "s:^\(.*setenv CBIN \).*:\1${EPREFIX}/usr/libexec/ccp4/bin:g" \ |
| 311 |
-e "s:^\(.*export CCP4_BIN=\).*:\1${EPREFIX}/usr/libexec/ccp4/bin:g" \ |
| 312 |
-e "s:^\(.*setenv CCP4_BIN \).*:\1${EPREFIX}/usr/libexec/ccp4/bin:g" \ |
| 313 |
-e "s:^\(.*export CLIBD_MON=\).*:\1${EPREFIX}/usr/share/ccp4/data/monomers/:g" \ |
| 314 |
-e "s:^\(.*setenv CLIBD_MON \).*:\1${EPREFIX}/usr/share/ccp4/data/monomers/:g" \ |
| 315 |
-e "s:^\(.*export CLIBD=\).*:\1${EPREFIX}/usr/share/ccp4/data:g" \ |
| 316 |
-e "s:^\(.*setenv CLIBD \).*:\1${EPREFIX}/usr/share/ccp4/data:g" \ |
| 317 |
-e "s:^\(.*export CCP4_LIB=\).*:\1${EPREFIX}/usr/$(get_libdir):g" \ |
| 318 |
-e "s:^\(.*setenv CCP4_LIB \).*:\1${EPREFIX}/usr/$(get_libdir):g" \ |
| 319 |
-e "s:^\(.*export CCP4_BROWSER=\).*:\1firefox:g" \ |
| 320 |
-e "s:^\(.*setenv CCP4_BROWSER \).*:\1firefox:g" \ |
| 321 |
-e "s:^\(.*export MANPATH=\).*:\1\${MANPATH}:g" \ |
| 322 |
-e "s:^\(.*setenv MANPATH \).*:\1\${MANPATH}:g" \ |
| 323 |
-e "s:^\(.*export DBCCP4I_TOP=\).*:\1${EPREFIX}/usr/share/ccp4/dbccp4i:g" \ |
| 324 |
-e "s:^\(.*setenv DBCCP4I_TOP \).*:\1${EPREFIX}/usr/share/ccp4/dbccp4i:g" \ |
| 325 |
-e "s:^\(.*export MOLREPLIB=\).*:\1${EPREFIX}/usr/share/ccp4/data/monomers/:g" \ |
| 326 |
-e "s:^\(.*setenv MOLREPLIB \).*:\1${EPREFIX}/usr/share/ccp4/data/monomers/:g" \ |
| 327 |
-e "s:^\(.*export CDOC=\).*:\1${EPREFIX}/usr/share/doc:g" \ |
| 328 |
-e "s:^\(.*setenv CDOC \).*:\1${EPREFIX}/usr/share/doc:g" \ |
| 329 |
-e "s:^\(.*export CEXAM=\).*:\1${EPREFIX}/usr/share/doc/examples:g" \ |
| 330 |
-e "s:^\(.*setenv CEXAM \).*:\1${EPREFIX}/usr/share/doc/examples:g" \ |
| 331 |
-e "s:^\(.*export CINCL=\).*:\1${EPREFIX}/usr/share/ccp4/include:g" \ |
| 332 |
-e "s:^\(.*setenv CINCL \).*:\1${EPREFIX}/usr/share/ccp4/include:g" \ |
| 333 |
-e '/# .*LD_LIBRARY_PATH specifies/,/^$/d' \ |
| 334 |
-e '/CLIB=/d' \ |
| 335 |
-e '/CLIB /d' \ |
| 336 |
-e '/CLIBS=/d' \ |
| 337 |
-e '/CLIBS /d' \ |
| 338 |
-e "/alias/d" \ |
| 339 |
-e "/CCP4_HELPDIR/d" \ |
| 340 |
-e "/IMOSFLM_VERSION/d" \ |
| 341 |
-i "${S}"/include/ccp4.setup* || die |
| 342 |
|
| 343 |
# Don't check for updates on every sourcing of /etc/profile |
| 344 |
sed -i \ |
| 345 |
-e "s:\(eval python.*\):#\1:g" \ |
| 346 |
"${S}"/include/ccp4.setup* || die |
| 347 |
|
| 348 |
# Libs |
| 349 |
for file in "${S}"/lib/*; do |
| 350 |
if [[ -d ${file} ]]; then |
| 351 |
continue |
| 352 |
elif [[ -x ${file} ]]; then |
| 353 |
dolib.so ${file} |
| 354 |
else |
| 355 |
insinto /usr/$(get_libdir) |
| 356 |
doins ${file} |
| 357 |
fi |
| 358 |
done |
| 359 |
|
| 360 |
prune_libtool_files |
| 361 |
|
| 362 |
sed \ |
| 363 |
-e 's:test "LD_LIBRARY_PATH":test "$LD_LIBRARY_PATH":g' \ |
| 364 |
-i "${S}"/include/ccp4.setup-sh || die |
| 365 |
|
| 366 |
# Setup scripts |
| 367 |
insinto /etc/profile.d |
| 368 |
newins "${S}"/include/ccp4.setup-csh 40ccp4.setup.csh |
| 369 |
newins "${S}"/include/ccp4.setup-sh 40ccp4.setup.sh |
| 370 |
rm -f "${S}"/include/ccp4.setup* |
| 371 |
|
| 372 |
# Data |
| 373 |
insinto /usr/share/ccp4/data/ |
| 374 |
doins -r "${S}"/lib/data/{*.PARM,*.prt,*.lib,*.dic,*.idl,*.cif,*.resource,*.york,*.hist,fraglib,reference_structures} |
| 375 |
|
| 376 |
# Environment files, setup scripts, etc. |
| 377 |
rm -rf "${S}"/include/{ccp4.setup*,COPYING,cpp_c_headers} || die |
| 378 |
insinto /usr/share/ccp4/ |
| 379 |
doins -r "${S}"/include |
| 380 |
|
| 381 |
dodoc "${S}"/lib/data/*.doc |
| 382 |
newdoc "${S}"/lib/data/README DATA-README |
| 383 |
} |
| 384 |
|
| 385 |
pkg_postinst() { |
| 386 |
einfo "The Web browser defaults to firefox. Change CCP4_BROWSER" |
| 387 |
einfo "in ${EPREFIX}/etc/profile.d/40ccp4.setup* to modify this." |
| 388 |
} |
| 389 |
|
| 390 |
# Epatch wrapper for bulk patching |
| 391 |
ccp_patch() { |
| 392 |
EPATCH_SINGLE_MSG=" ${1##*/} ..." epatch ${1} |
| 393 |
} |
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