[gentoo-commits] gentoo-x86 commit in sci-biology/velvet: ChangeLog velvet-0.7.34.ebuild

[Andrey Kislyuk (weaver)]

weaver      09/06/21 14:49:00

  Modified:             ChangeLog
  Added:                velvet-0.7.34.ebuild
  Log:
  Version bump
  (Portage version: 2.2_rc30/cvs/Linux x86_64)

Revision  Changes    Path
1.2                  sci-biology/velvet/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/ChangeLog?r1=1.1&r2=1.2

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- ChangeLog	5 Jun 2009 10:06:43 -0000	1.1
+++ ChangeLog	21 Jun 2009 14:49:00 -0000	1.2
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/velvet
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.1 2009/06/05 10:06:43 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.2 2009/06/21 14:49:00 weaver Exp $
+
+*velvet-0.7.34 (21 Jun 2009)
+
+  21 Jun 2009; Andrey Kislyuk <weaver@g.o> +velvet-0.7.34.ebuild:
+  Version bump
 
 *velvet-0.7.31 (05 Jun 2009)
 



1.1                  sci-biology/velvet/velvet-0.7.34.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/velvet-0.7.34.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/velvet-0.7.34.ebuild?rev=1.1&content-type=text/plain

Index: velvet-0.7.34.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.34.ebuild,v 1.1 2009/06/21 14:49:00 weaver Exp $

EAPI="2"

MY_P="${PN}_${PV}"

DESCRIPTION="A sequence assembler for very short reads"
HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"

LICENSE="GPL-2"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"

DEPEND=""
RDEPEND="${DEPEND}"

S="${WORKDIR}/${MY_P}"

src_prepare() {
	rm -rf "${S}"/third-party/zlib*
	sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \
		-e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \
		-e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \
		"${S}"/Makefile || die
	sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die
}

src_compile() {
	emake -j1 || die
	emake -j1 color || die
}

src_install() {
	dobin velvet{g,h,g_de,h_de} third-party/layout/graph2.py third-party/afg_handling/*.pl || die
	dodoc Manual.pdf CREDITS.txt
}