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commit: cd7d9ba38de3df2079f68c53db8ae4fa6fb3dab3 |
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Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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AuthorDate: Thu May 30 10:29:38 2013 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Thu May 30 10:29:38 2013 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=cd7d9ba3 |
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Merge branch 'master' into ccp4 |
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* master: (776 commits) |
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Moved to tree Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
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sci-chemistry/coot: Move to new python eclasses |
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sci-chemistry/coot: Drop version from clipper |
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root-docs: fix sandbox access violation |
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root: fix build with postgres |
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Moved html documentation one folder up. |
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Version bump. |
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Added html documentation. |
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sci-libs/blas-reference: proper versioning for live ebuild |
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sci-libs/coinor-flopcpp: Initial import |
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Switch to EAPI5 |
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sci-libs/coinor-sample: Version bump |
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sci-libs/coinor-symphony: Version bump |
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sci-libs/coinor-cppad: Version bump |
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sci-libs/coinor-cbc: Version bump |
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sci-libs/coinor-cgl: Fixed missing header |
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sci-libs/coinor-buildtools: Initial import |
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sci-libs/coinor-alps: Version bump |
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removed in source builds |
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sci-libs/coinor-cgl: Version bump |
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... |
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Conflicts: |
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sci-chemistry/jligand/ChangeLog |
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sci-chemistry/jligand/Manifest |
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sci-chemistry/jligand/jligand-1.0.37.ebuild |
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sci-misc/salome-visu/salome-visu-5.1.3.ebuild | 8 +- |
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sci-misc/salome-visu/salome-visu-5.1.4.ebuild | 8 +- |
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sci-misc/salome-yacs/ChangeLog | 6 +- |
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sci-misc/salome-yacs/Manifest | 4 +- |
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sci-misc/salome-yacs/metadata.xml | 2 +- |
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sci-misc/salome-yacs/salome-yacs-5.1.3.ebuild | 8 +- |
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sci-misc/salome-yacs/salome-yacs-5.1.4.ebuild | 8 +- |
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sci-misc/sfst/ChangeLog | 6 +- |
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sci-misc/sfst/metadata.xml | 10 +- |
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sci-misc/sfst/sfst-1.4.2.ebuild | 4 +- |
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sci-misc/sfst/sfst-1.4.6g.ebuild | 4 +- |
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sci-physics/LoopTools/ChangeLog | 6 +- |
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sci-physics/LoopTools/Manifest | 2 +- |
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sci-physics/abinit/ChangeLog | 27 +- |
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sci-physics/abinit/abinit-6.12.3-r2.ebuild | 335 -- |
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sci-physics/abinit/abinit-7.0.4.ebuild | 356 ++ |
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sci-physics/abinit/abinit-7.0.5.ebuild | 356 ++ |
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sci-physics/abinit/files/6.12.3-gui-makefiles.tbz | Bin 0 -> 14600 bytes |
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sci-physics/abinit/files/7.0.4-test_dirs.patch | 12 + |
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sci-physics/abinit/metadata.xml | 74 +- |
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sci-physics/atompaw/ChangeLog | 13 +- |
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sci-physics/atompaw/Manifest | 2 +- |
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sci-physics/atompaw/atompaw-3.0.1.4.ebuild | 70 - |
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sci-physics/atompaw/atompaw-3.0.1.9.ebuild | 68 + |
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sci-physics/atompaw/metadata.xml | 14 +- |
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sci-physics/atompaw2abinit/ChangeLog | 7 +- |
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sci-physics/atompaw2abinit/Manifest | 2 +- |
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.../atompaw2abinit/atompaw2abinit-3.3.0-r1.ebuild | 19 +- |
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sci-physics/atompaw2abinit/metadata.xml | 8 +- |
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sci-physics/elk/ChangeLog | 6 +- |
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sci-physics/elk/elk-1.4.22.ebuild | 92 +- |
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sci-physics/elk/metadata.xml | 10 +- |
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sci-physics/espresso++/ChangeLog | 8 +- |
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sci-physics/espresso++/espresso++-9999.ebuild | 21 +- |
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sci-physics/espresso/ChangeLog | 5 +- |
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sci-physics/espresso/espresso-9999.ebuild | 14 +- |
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sci-physics/geant-vmc/ChangeLog | 13 + |
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sci-physics/geant-vmc/Manifest | 2 + |
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sci-physics/geant-vmc/geant-vmc-3.1.14.ebuild | 39 + |
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sci-physics/geant-vmc/geant-vmc-4.2.14.ebuild | 60 + |
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sci-physics/geant-vmc/metadata.xml | 19 + |
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sci-physics/geant/ChangeLog | 353 ++ |
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sci-physics/geant/Manifest | 2 + |
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sci-physics/geant/geant-3.21.14-r4.ebuild | 70 + |
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sci-physics/geant/metadata.xml | 14 + |
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sci-physics/herwig++/ChangeLog | 16 +- |
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sci-physics/herwig++/Manifest | 2 +- |
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...ptools.patch => herwig++-2.6.3-looptools.patch} | 0 |
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sci-physics/herwig++/herwig++-2.6.1b.ebuild | 50 - |
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sci-physics/herwig++/herwig++-2.6.3.ebuild | 50 + |
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sci-physics/lammps/ChangeLog | 55 + |
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sci-physics/lammps/Manifest | 3 + |
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sci-physics/lammps/lammps-20130512.ebuild | 72 + |
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sci-physics/lammps/lammps-20130514.ebuild | 75 + |
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sci-physics/lammps/lammps-20130526.ebuild | 75 + |
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sci-physics/lammps/metadata.xml | 30 + |
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sci-physics/openmx/ChangeLog | 17 + |
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sci-physics/openmx/metadata.xml | 5 + |
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sci-physics/openmx/openmx-3.6.ebuild | 97 + |
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sci-physics/root/ChangeLog | 29 +- |
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sci-physics/root/Manifest | 5 +- |
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.../root/files/root-5.28.00b-asneeded.patch | 20 - |
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.../root/files/root-5.28.00b-prop-ldflags.patch | 13 - |
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.../files/root-5.32.00-explicit-functions.patch | 18 - |
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.../root/files/root-5.32.00-prop-flags.patch | 15 + |
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.../root/files/root-5.34.05-nobyte-compile.patch | 137 + |
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sci-physics/root/metadata.xml | 39 +- |
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sci-physics/root/root-5.32.04.ebuild | 378 -- |
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sci-physics/root/root-5.34.03.ebuild | 378 -- |
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sci-physics/root/root-5.34.07.ebuild | 381 ++ |
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sci-physics/root/root-9999.ebuild | 16 +- |
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sci-physics/thepeg/ChangeLog | 16 +- |
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sci-physics/thepeg/Manifest | 6 +- |
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...eg-1.8.1-java.patch => thepeg-1.8.3-java.patch} | 0 |
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sci-physics/thepeg/thepeg-1.8.3.ebuild | 92 + |
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sci-physics/vgm/ChangeLog | 13 + |
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sci-physics/vgm/metadata.xml | 13 + |
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sci-physics/vgm/vgm-3.06.ebuild | 64 + |
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sci-visualization/ferret-bin/ChangeLog | 7 +- |
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sci-visualization/ferret-bin/metadata.xml | 12 +- |
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sci-visualization/gnuplot/ChangeLog | 22 +- |
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sci-visualization/gnuplot/gnuplot-4.6.9999.ebuild | 213 +- |
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sci-visualization/gnuplot/metadata.xml | 26 +- |
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sci-visualization/labplot/metadata.xml | 3 +- |
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sci-visualization/paraview/ChangeLog | 14 +- |
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.../paraview/files/paraview-3.14.1-vtknetcd.patch | 50 +- |
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sci-visualization/paraview/metadata.xml | 36 +- |
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sci-visualization/paraview/paraview-3.10.1.ebuild | 28 +- |
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sci-visualization/v_sim/ChangeLog | 6 +- |
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sci-visualization/v_sim/v_sim-3.6.0.ebuild | 4 +- |
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sci-visualization/yt/yt-9999.ebuild | 3 +- |
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skel.ChangeLog | 2 +- |
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skel.metadata.xml | 38 +- |
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sys-apps/likwid/Manifest | 1 + |
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sys-apps/likwid/files/likwid.patch | 27 + |
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sys-apps/likwid/files/use_uncore.patch | 12 + |
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sys-apps/likwid/likwid-3.0.ebuild | 33 + |
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sys-apps/likwid/metadata.xml | 22 + |
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sys-cluster/blcr/ChangeLog | 5 +- |
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sys-cluster/blcr/blcr-0.8.4.ebuild | 3 +- |
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sys-cluster/blcr/metadata.xml | 4 +- |
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sys-cluster/empi/ChangeLog | 10 +- |
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sys-cluster/empi/empi-0.7.ebuild | 28 - |
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sys-cluster/empi/files/ChangeLog-0.7 | 164 - |
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sys-cluster/empi/files/ChangeLog-0.8 | 68 + |
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sys-cluster/empi/files/empi-0.7 | 408 -- |
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sys-cluster/empi/files/empi-0.8 | 492 +++ |
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sys-cluster/empi/files/eselect.mpi-0.7 | 274 -- |
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sys-cluster/empi/files/eselect.mpi-0.8 | 274 ++ |
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sys-cluster/hpl/ChangeLog | 9 +- |
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sys-cluster/hpl/Manifest | 2 +- |
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sys-cluster/hpl/hpl-2.0-r1.ebuild | 20 +- |
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sys-cluster/hpl/metadata.xml | 12 +- |
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sys-cluster/hpx/Manifest | 1 + |
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sys-cluster/hpx/hpx-0.9.5.ebuild | 28 + |
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sys-cluster/hpx/metadata.xml | 17 + |
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sys-cluster/lustre/ChangeLog | 419 +- |
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...01-LU-1812-kernel-3.7-FC18-server-patches.patch | 380 ++ |
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...nel-sock_map_fd-replaced-by-sock_alloc_fi.patch | 137 + |
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...6-kernel-Kernel-update-for-3.7.2-201.fc18.patch | 184 + |
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...pat-posix_acl_-to-from-_xattr-take-user_n.patch | 159 + |
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...005-LU-2800-llite-introduce-local-getname.patch | 91 + |
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.../files/0006-LU-2987-llite-rcu-free-inode.patch | 89 + |
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...50-kernel-3.8-upstream-removes-vmtruncate.patch | 83 + |
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...-2850-kernel-3.8-upstream-kills-daemonize.patch | 3005 ++++++++++++++ |
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...ld-make-AC-check-for-linux-arch-sandbox-f.patch | 95 + |
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...rnel-3.9-hlist_for_each_entry-uses-3-args.patch | 115 + |
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...79-kernel-f_vfsmnt-replaced-by-f_path.mnt.patch | 82 + |
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...uild-fix-compilation-error-with-gcc-4.7.2.patch | 43 + |
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...7-vfs-kernel-3.1-renames-lock-manager-ops.patch | 190 - |
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...37-vfs-kernel-3.1-kills-inode-i_alloc_sem.patch | 242 -- |
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...fs-kernel-3.1-changes-open_to_namei_flags.patch | 95 - |
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...7-vfs-provides-ll_get_acl-to-i_op-get_acl.patch | 150 - |
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...ck-kernel-3.2-make_request_fn-returns-voi.patch | 108 - |
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...337-vfs-kernel-3.2-protects-inode-i_nlink.patch | 194 - |
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...-3.3-changes-super_operations-inode_opera.patch | 217 - |
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...nel-remove-unnecessary-includings-of-syst.patch | 211 - |
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...-kernel-3.4-touch_atime-switchs-to-1-argu.patch | 89 - |
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...-kernel-3.4-converts-d_alloc_root-to-d_ma.patch | 128 - |
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...1-LU-1337-kernel-v3.5-defines-INVALID_UID.patch | 31 - |
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...te-kernel-3.5-renames-end_writeback-to-cl.patch | 90 - |
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...nel-3.5-kernel-encode_fh-passes-in-parent.patch | 88 - |
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sys-cluster/lustre/lustre-9999.ebuild | 103 +- |
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sys-cluster/lustre/metadata.xml | 5 + |
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sys-cluster/mvapich2/ChangeLog | 7 + |
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sys-cluster/mvapich2/Manifest | 2 +- |
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sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild | 4 +- |
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sys-cluster/openmpi/ChangeLog | 14 +- |
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sys-cluster/openmpi/Manifest | 2 +- |
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sys-cluster/openmpi/metadata.xml | 2 - |
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sys-cluster/openmpi/openmpi-1.5.3.ebuild | 115 - |
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sys-cluster/openmpi/openmpi-1.6.4.ebuild | 160 + |
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sys-cluster/ovis/ChangeLog | 5 +- |
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sys-cluster/ovis/metadata.xml | 10 +- |
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sys-cluster/ovis/ovis-3.0.1.ebuild | 6 +- |
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virtual/blas/ChangeLog | 5 +- |
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virtual/blas/blas-2.1.ebuild | 4 +- |
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virtual/blas/metadata.xml | 4 +- |
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virtual/cblas/ChangeLog | 6 +- |
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virtual/cblas/cblas-2.0.ebuild | 4 +- |
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virtual/geant/ChangeLog | 9 + |
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virtual/geant/geant-3.ebuild | 17 + |
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virtual/geant/metadata.xml | 8 + |
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virtual/lapack/ChangeLog | 8 +- |
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virtual/lapack/lapack-3.3.ebuild | 23 - |
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virtual/lapack/lapack-3.4.ebuild | 23 + |
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virtual/lapack/metadata.xml | 3 +- |
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virtual/scalapack/ChangeLog | 9 +- |
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virtual/scalapack/metadata.xml | 4 +- |
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virtual/scalapack/scalapack-1.8.ebuild | 21 - |
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virtual/scalapack/scalapack-2.0.ebuild | 21 + |
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x11-libs/xview-bin/ChangeLog | 9 +- |
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x11-libs/xview-bin/Manifest | 2 +- |
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x11-libs/xview-bin/metadata.xml | 10 +- |
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x11-libs/xview-bin/xview-bin-3.2_p1428.ebuild | 6 +- |
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x11-libs/xview/ChangeLog | 12 +- |
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x11-libs/xview/Manifest | 1 + |
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x11-libs/xview/metadata.xml | 10 +- |
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x11-libs/xview/xview-3.2-r6.ebuild | 4 +- |
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x11-libs/xview/xview-3.2-r7.ebuild | 4 +- |
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x11-libs/xview/xview-3.2-r8.ebuild | 108 + |
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1409 files changed, 29080 insertions(+), 27064 deletions(-) |
1449 |
|
1450 |
diff --cc sci-chemistry/jligand/ChangeLog |
1451 |
index b555231,79845c4..9e2c106 |
1452 |
--- a/sci-chemistry/jligand/ChangeLog |
1453 |
+++ b/sci-chemistry/jligand/ChangeLog |
1454 |
@@@ -1,17 -1,11 +1,17 @@@ |
1455 |
# ChangeLog for sci-chemistry/jligand |
1456 |
- # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
1457 |
+ # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
1458 |
# $Header: $ |
1459 |
|
1460 |
- 10 Dec 2012; Justin Lecher <jlec@g.o> -jligand-1.0.19.ebuild, |
1461 |
- +jligand-1.0.37.ebuild: |
1462 |
- Version Bump |
1463 |
+ 03 Mar 2013; Justin Lecher <jlec@g.o> jligand-1.0.19.ebuild, |
1464 |
+ metadata.xml: |
1465 |
+ Fix version of refmac dep |
1466 |
|
1467 |
+*jligand-1.0.37 (10 Dec 2012) |
1468 |
+ |
1469 |
+ 10 Dec 2012; Justin Lecher <jlec@g.o> -jligand-1.0.19.ebuild, |
1470 |
+ +jligand-1.0.37.ebuild: |
1471 |
+ Version Bump |
1472 |
+ |
1473 |
*jligand-1.0.19 (25 Jun 2011) |
1474 |
|
1475 |
25 Jun 2011; Justin Lecher <jlec@g.o> -jligand-0.1.ebuild, |