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From: "Justin Lecher (jlec)" <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/ncbi-tools++: ChangeLog ncbi-tools++-2009.05.15-r6.ebuild ncbi-tools++-2009.05.15-r5.ebuild
Date: Sat, 26 Jun 2010 11:05:03
Message-Id: 20100626110459.CD9172CF76@corvid.gentoo.org
1 jlec 10/06/26 11:04:59
2
3 Modified: ChangeLog
4 Added: ncbi-tools++-2009.05.15-r6.ebuild
5 Removed: ncbi-tools++-2009.05.15-r5.ebuild
6 Log:
7 Fixed as-needed problem
8 (Portage version: 2.2_rc67/cvs/Linux x86_64)
9
10 Revision Changes Path
11 1.16 sci-biology/ncbi-tools++/ChangeLog
12
13 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?rev=1.16&view=markup
14 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?rev=1.16&content-type=text/plain
15 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?r1=1.15&r2=1.16
16
17 Index: ChangeLog
18 ===================================================================
19 RCS file: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v
20 retrieving revision 1.15
21 retrieving revision 1.16
22 diff -u -r1.15 -r1.16
23 --- ChangeLog 26 Jun 2010 07:28:40 -0000 1.15
24 +++ ChangeLog 26 Jun 2010 11:04:59 -0000 1.16
25 @@ -1,6 +1,13 @@
26 # ChangeLog for sci-biology/ncbi-tools++
27 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
28 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.15 2010/06/26 07:28:40 jlec Exp $
29 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.16 2010/06/26 11:04:59 jlec Exp $
30 +
31 +*ncbi-tools++-2009.05.15-r6 (26 Jun 2010)
32 +
33 + 26 Jun 2010; Justin Lecher <jlec@g.o>
34 + -ncbi-tools++-2009.05.15-r5.ebuild, +ncbi-tools++-2009.05.15-r6.ebuild,
35 + +files/ncbi-tools++-2009.05.15-asneeded.patch:
36 + Fixed as-needed problem
37
38 26 Jun 2010; Justin Lecher <jlec@g.o>
39 ncbi-tools++-2009.05.15-r5.ebuild:
40
41
42
43 1.1 sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r6.ebuild
44
45 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r6.ebuild?rev=1.1&view=markup
46 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r6.ebuild?rev=1.1&content-type=text/plain
47
48 Index: ncbi-tools++-2009.05.15-r6.ebuild
49 ===================================================================
50 # Copyright 1999-2010 Gentoo Foundation
51 # Distributed under the terms of the GNU General Public License v2
52 # $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r6.ebuild,v 1.1 2010/06/26 11:04:59 jlec Exp $
53
54 EAPI="3"
55
56 inherit eutils flag-o-matic multilib toolchain-funcs
57
58 MY_TAG="May_15_2009"
59 MY_Y="${MY_TAG/*_/}"
60 MY_P="ncbi_cxx--${MY_TAG}"
61
62 DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
63 HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
64 SRC_URI="ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/${MY_Y}/${MY_TAG}/${MY_P}.tar.gz"
65
66 LICENSE="public-domain"
67 SLOT="0"
68 #IUSE="X unicode opengl gnutls test"
69 IUSE="sqlite"
70 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
71
72 # wxGTK: must run eselect wxwindows after installing wxgtk or build will fail. Check and abort here.
73 # dev-libs/xalan-c - problems detecting, api mismatch?
74
75 # apparently gbench-only dependencies
76 # dev-libs/libxml2
77 # dev-libs/libxslt
78 # dev-libs/xerces-c
79 # dev-libs/lzo:2
80 # dev-libs/boost
81 # app-text/sablotron
82 # media-libs/libpng
83 # media-libs/tiff
84 # media-libs/jpeg
85 # x11-libs/libXpm
86 # unicode? ( dev-libs/icu )
87 # opengl? ( media-libs/glut
88 # media-libs/mesa )
89 # gnutls? ( net-libs/gnutls )
90 # X? ( x11-libs/fltk:1.1
91 # x11-libs/wxGTK )
92
93 DEPEND="sqlite? ( dev-db/sqlite:3 )"
94 RDEPEND="${DEPEND}"
95
96 S="${WORKDIR}/${MY_P}"
97
98 src_prepare() {
99 epatch "${FILESDIR}"/${P}-gcc44.patch \
100 "${FILESDIR}"/${P}-asneeded.patch
101 sed -i -e 's/-print-file-name=libstdc++.a//' \
102 -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
103 src/build-system/configure || die
104 }
105
106 src_configure() {
107 # required with gcc-4.4 and code turned on by --with-mt
108 append-cxxflags -fpermissive
109
110 tc-export CXX CC
111
112 # econf fails
113 # --with-bin-release and --without-ftds are workarounds for build system bugs
114 # --without-boost: see bug 312921
115 # NB: build system supports ICC
116 "${S}"/configure --without-debug \
117 --with-bin-release \
118 --without-static \
119 --with-dll \
120 --without-ftds \
121 --without-boost \
122 --prefix="${ED}"/usr \
123 --libdir="${ED}"/usr/$(get_libdir)/${PN} \
124 --with-z="${EPREFIX}/usr" \
125 --with-bz2="${EPREFIX}/usr" \
126 --with-pcre="${EPREFIX}/usr" \
127 --with-openssl="${EPREFIX}/usr" \
128 --with-mt \
129 || die
130
131 # apparently gbench-only configs
132 # --with-boost="/usr" \
133 # --with-sablot="/usr" \
134 # --with-icu="/usr" \
135 # --with-fltk="/usr" \
136 # --with-mesa="/usr" \
137 # --with-glut="/usr" \
138 # --with-wxwidgets="/usr" \
139 # problems detecting this
140 # --with-xalan="/usr" \
141 }
142
143 src_compile() {
144 emake all_r -C GCC*-Release*/build || die
145 }
146
147 src_install() {
148 emake install || die
149 # File collisions with sci-biology/ncbi-tools
150 rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp}
151
152 echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
153 doenvd "${S}/99${PN}"
154 }
155
156 pkg_postinst() {
157 einfo 'Please run "source /etc/profile" before using this package in the current shell.'
158 }
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