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jlec 13/04/29 10:05:58 |
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|
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Modified: metadata.xml ChangeLog |
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Added: mafft-7.037.ebuild |
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Log: |
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sci-biology/mafft: Version Bump |
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|
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(Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916) |
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|
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Revision Changes Path |
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1.2 sci-biology/mafft/metadata.xml |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/metadata.xml?rev=1.2&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/metadata.xml?rev=1.2&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/metadata.xml?r1=1.1&r2=1.2 |
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|
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Index: metadata.xml |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/mafft/metadata.xml,v |
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retrieving revision 1.1 |
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retrieving revision 1.2 |
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diff -u -r1.1 -r1.2 |
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--- metadata.xml 21 Oct 2006 05:29:23 -0000 1.1 |
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+++ metadata.xml 29 Apr 2013 10:05:58 -0000 1.2 |
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@@ -1,5 +1,5 @@ |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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-<herd>sci-biology</herd> |
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+ <herd>sci-biology</herd> |
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</pkgmetadata> |
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|
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|
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|
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1.10 sci-biology/mafft/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/ChangeLog?rev=1.10&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/ChangeLog?rev=1.10&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/ChangeLog?r1=1.9&r2=1.10 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v |
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retrieving revision 1.9 |
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retrieving revision 1.10 |
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diff -u -r1.9 -r1.10 |
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--- ChangeLog 21 Nov 2011 15:30:19 -0000 1.9 |
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+++ ChangeLog 29 Apr 2013 10:05:58 -0000 1.10 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-biology/mafft |
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-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.9 2011/11/21 15:30:19 jlec Exp $ |
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+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.10 2013/04/29 10:05:58 jlec Exp $ |
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+ |
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+*mafft-7.037 (29 Apr 2013) |
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+ |
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+ 29 Apr 2013; Justin Lecher <jlec@g.o> +mafft-7.037.ebuild, |
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+ +files/mafft-7.037-respect.patch, metadata.xml: |
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+ Version Bump |
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|
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21 Nov 2011; Justin Lecher <jlec@g.o> mafft-6.811.ebuild: |
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keyworded for ~x86-macos ~x64-macos, tested by Johan Hattne #390123 |
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|
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|
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1.1 sci-biology/mafft/mafft-7.037.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/mafft-7.037.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/mafft-7.037.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: mafft-7.037.ebuild |
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=================================================================== |
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# Copyright 1999-2013 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-7.037.ebuild,v 1.1 2013/04/29 10:05:58 jlec Exp $ |
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|
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EAPI=5 |
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|
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inherit eutils flag-o-matic multilib toolchain-funcs |
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|
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EXTENSIONS="-without-extensions" |
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|
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DESCRIPTION="Multiple sequence alignments using a variety of algorithms" |
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HOMEPAGE="http://mafft.cbrc.jp/alignment/software/index.html" |
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SRC_URI="http://mafft.cbrc.jp/alignment/software/${P}${EXTENSIONS}-src.tgz" |
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|
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LICENSE="BSD" |
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SLOT="0" |
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KEYWORDS="~amd64 ~x86 ~x64-macos ~x86-macos" |
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IUSE="threads" |
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|
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S="${WORKDIR}"/${P}${EXTENSIONS} |
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|
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src_prepare() { |
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epatch "${FILESDIR}"/${P}-respect.patch |
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use threads && append-flags -Denablemultithread |
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sed "s:GENTOOLIBDIR:$(get_libdir):g" -i core/Makefile |
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sed -i -e "s/(PREFIX)\/man/(PREFIX)\/share\/man/" "${S}"/core/Makefile || die "sed failed" |
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} |
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|
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src_compile() { |
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pushd core |
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emake \ |
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ENABLE_MULTITHREAD=1 \ |
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PREFIX="${EPREFIX}"/usr \ |
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CC="$(tc-getCC)" \ |
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CFLAGS="${CFLAGS}" \ |
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|| die "make failed" |
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popd |
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} |
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|
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src_install() { |
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pushd core |
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emake PREFIX="${ED}usr" install || die "install failed" |
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popd |
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dodoc readme || die |
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} |
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