Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/fastx_toolkit/
Date: Thu, 29 Aug 2013 15:35:03
Message-Id: 1377790466.3500e988a9231e0bb79e3de3daaf48ac1e7d1d9a.mmokrejs@gentoo
1 commit: 3500e988a9231e0bb79e3de3daaf48ac1e7d1d9a
2 Author: Martin Mokrejš <mmokrejs <AT> gmail <DOT> com>
3 AuthorDate: Thu Aug 29 15:34:26 2013 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Thu Aug 29 15:34:26 2013 +0000
6 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3500e988
7
8 New package for FASTA/FASTQ preprocessing
9
10 ---
11 sci-biology/fastx_toolkit/ChangeLog | 10 +++++++++
12 .../fastx_toolkit/fastx_toolkit-0.0.13.2.ebuild | 26 ++++++++++++++++++++++
13 2 files changed, 36 insertions(+)
14
15 diff --git a/sci-biology/fastx_toolkit/ChangeLog b/sci-biology/fastx_toolkit/ChangeLog
16 new file mode 100644
17 index 0000000..907109e
18 --- /dev/null
19 +++ b/sci-biology/fastx_toolkit/ChangeLog
20 @@ -0,0 +1,10 @@
21 +# ChangeLog for sci-biology/fastx_toolkit
22 +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
23 +# $Header: $
24 +
25 +*fastx_toolkit-0.0.13.2 (29 Aug 2013)
26 +
27 + 29 Aug 2013; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
28 + +fastx_toolkit-0.0.13.2.ebuild:
29 + New package for FASTA/FASTQ preprocessing.
30 +
31
32 diff --git a/sci-biology/fastx_toolkit/fastx_toolkit-0.0.13.2.ebuild b/sci-biology/fastx_toolkit/fastx_toolkit-0.0.13.2.ebuild
33 new file mode 100644
34 index 0000000..ed24005
35 --- /dev/null
36 +++ b/sci-biology/fastx_toolkit/fastx_toolkit-0.0.13.2.ebuild
37 @@ -0,0 +1,26 @@
38 +# Copyright 1999-2013 Gentoo Foundation
39 +# Distributed under the terms of the GNU General Public License v2
40 +# $Header: $
41 +
42 +EAPI=3
43 +
44 +DESCRIPTION="Tools for Short Read FASTA/FASTQ file processing"
45 +HOMEPAGE="http://hannonlab.cshl.edu/fastx_toolkit"
46 +SRC_URI="http://hannonlab.cshl.edu/fastx_toolkit/fastx_toolkit-"${PV}".tar.bz2"
47 +
48 +LICENSE="AGPL-3"
49 +SLOT="0"
50 +KEYWORDS="~amd64 ~x86"
51 +IUSE=""
52 +
53 +DEPEND=">=sci-biology/libgtextutils-0.6.1"
54 +RDEPEND="${DEPEND}
55 + dev-perl/PerlIO-gzip
56 + dev-perl/GDGraph
57 + sys-apps/sed
58 + sci-visualization/gnuplot"
59 +
60 +src_install(){
61 + emake install DESTDIR="${D}"
62 +}
63 +