[gentoo-commits] proj/sci:master commit in: sci-biology/MolBioLib/

[Martin Mokrejs]

commit:     efe8a4f25b66f0f3dbd800e26d8f12973330b5c8
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Apr  1 19:11:50 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Apr  1 19:11:50 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=efe8a4f2

sci-biology/MolBioLib: yet another package with bundled samtools, bamtools etc.

Package-Manager: portage-2.2.28

 sci-biology/MolBioLib/MolBioLib-5.ebuild | 31 +++++++++++++++++++++++++++++++
 sci-biology/MolBioLib/metadata.xml       | 12 ++++++++++++
 2 files changed, 43 insertions(+)

diff --git a/sci-biology/MolBioLib/MolBioLib-5.ebuild b/sci-biology/MolBioLib/MolBioLib-5.ebuild
new file mode 100644
index 0000000..5cb9ea2
--- /dev/null
+++ b/sci-biology/MolBioLib/MolBioLib-5.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+DESCRIPTION="C++11 framework for rapid develop and deploy of bioinformatic tasks"
+HOMEPAGE="https://sourceforge.net/projects/molbiolib"
+SRC_URI="https://sourceforge.net/projects/molbiolib/files/MolBioLib_public.version${PV}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+# contains bundled samtools-0.1.18 and bamtools (pezmaster31-bamtools-d553a62) which contains jsoncpp
+# also needs app-doc/doxygen
+DEPEND="dev-lang/perl
+	sys-devel/gcc:*
+	sys-devel/clang
+	>=sci-biology/samtools-0.1.18:0
+	<sci-biology/samtools-1:0"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/MolBioLib
+
+src_compile(){
+	perl MakeAllApps.pl || die
+}
+
+# src_install() needs to be written

diff --git a/sci-biology/MolBioLib/metadata.xml b/sci-biology/MolBioLib/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/MolBioLib/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@g.o</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>