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jlec 10/02/25 08:06:29 |
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|
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Modified: ChangeLog |
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Added: arp-warp-bin-7.0.1-r2.ebuild |
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Removed: arp-warp-bin-7.0.1-r1.ebuild |
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Log: |
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Handle ccp4 installation correctly |
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(Portage version: 2.2_rc63/cvs/Linux i686) |
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|
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Revision Changes Path |
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1.3 sci-chemistry/arp-warp-bin/ChangeLog |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/ChangeLog?rev=1.3&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/ChangeLog?rev=1.3&content-type=text/plain |
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diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/ChangeLog?r1=1.2&r2=1.3 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/arp-warp-bin/ChangeLog,v |
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retrieving revision 1.2 |
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retrieving revision 1.3 |
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diff -u -r1.2 -r1.3 |
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--- ChangeLog 7 Feb 2010 22:04:14 -0000 1.2 |
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+++ ChangeLog 25 Feb 2010 08:06:28 -0000 1.3 |
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@@ -1,6 +1,13 @@ |
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# ChangeLog for sci-chemistry/arp-warp-bin |
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# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/arp-warp-bin/ChangeLog,v 1.2 2010/02/07 22:04:14 jlec Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/arp-warp-bin/ChangeLog,v 1.3 2010/02/25 08:06:28 jlec Exp $ |
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+ |
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+*arp-warp-bin-7.0.1-r2 (25 Feb 2010) |
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+ |
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+ 25 Feb 2010; Justin Lecher (jlec) <jlec@×××××××××.net> |
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+ files/7.0.1-setup.patch, -arp-warp-bin-7.0.1-r1.ebuild, |
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+ files/7.0.1-source-ccp4-if-needed.patch, +arp-warp-bin-7.0.1-r2.ebuild: |
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+ Handle ccp4 installation correctly |
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|
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07 Feb 2010; Justin Lecher (jlec) <jlec@g.o> |
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arp-warp-bin-7.0.1-r1.ebuild: |
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|
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|
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|
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1.1 sci-chemistry/arp-warp-bin/arp-warp-bin-7.0.1-r2.ebuild |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/arp-warp-bin-7.0.1-r2.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/arp-warp-bin-7.0.1-r2.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: arp-warp-bin-7.0.1-r2.ebuild |
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=================================================================== |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/arp-warp-bin/arp-warp-bin-7.0.1-r2.ebuild,v 1.1 2010/02/25 08:06:28 jlec Exp $ |
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|
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inherit eutils python |
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|
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MY_P="arp_warp_${PV}" |
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|
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DESCRIPTION="ARP/wARP is a software for improvement and interpretation of crystallographic electron density maps" |
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SRC_URI="${MY_P}.tar.gz" |
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HOMEPAGE="http://www.embl-hamburg.de/ARP/" |
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|
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LICENSE="ArpWarp" |
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RESTRICT="fetch" |
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SLOT="0" |
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KEYWORDS="-* ~amd64 ~x86" |
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IUSE="" |
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|
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RDEPEND="app-shells/tcsh |
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>=sci-chemistry/ccp4-6.1.3 |
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sys-apps/gawk |
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>=dev-lang/python-2.4" |
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DEPEND="" |
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|
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S="${WORKDIR}/${MY_P}" |
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|
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pkg_nofetch(){ |
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elog "Fill out the form at http://www.embl-hamburg.de/ARP/" |
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elog "and place ${A} in ${DISTDIR}" |
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} |
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|
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src_unpack() { |
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unpack ${A} |
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cd "${S}" |
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epatch "${FILESDIR}"/${PV}-setup.patch |
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epatch "${FILESDIR}"/${PV}-source-ccp4-if-needed.patch |
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} |
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|
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src_install(){ |
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python_version |
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m_type=$(uname -m) |
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os_type=$(uname) |
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|
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insinto /opt/${PN}/byte-code/python-${PYVER} |
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doins "${S}"/flex-wARP-src-261/*py |
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|
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exeinto /opt/${PN}/bin/bin-${m_type}-${os_type} |
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doexe "${S}"/bin/bin-${m_type}-${os_type}/* && \ |
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doexe "${S}"/share/*sh || die |
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|
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insinto /opt/${PN}/bin/bin-${m_type}-${os_type} |
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doins "${S}"/share/*{gif,XYZ,bash,csh,dat,lib,tbl,llh} || die |
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|
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insinto /etc/profile.d/ |
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newins "${S}"/share/arpwarp_setup_base.csh 90arpwarp_setup.csh && \ |
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newins "${S}"/share/arpwarp_setup_base.bash 90arpwarp_setup.sh || die |
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|
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dodoc "${S}"/README |
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dohtml -r "${S}"/manual/* |
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insinto /usr/share/doc/${PF} |
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doins -r "${S}"/{examples,ARP_wARP_CCP4I6.tar.gz} |
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} |
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|
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pkg_postinst(){ |
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python_need_rebuild |
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python_mod_optimize "${ROOT}"/opt/${PN}/byte-code/python-${PYVER} |
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|
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testcommand=$(echo 3 2 | awk '{printf"%3.1f",$1/$2}') |
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if [ $testcommand == "1,5" ];then |
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ewarn "*** ERROR ***" |
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ewarn " 3/2=" $testcommand |
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ewarn "Invalid decimal separator (must be ".")" |
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ewarn "You need to set this correctly!!!" |
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ewarn |
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ewarn "One way of setting the decimal separator is:" |
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ewarn "setenv LC_NUMERIC C' in your .cshrc file" |
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ewarn "\tor" |
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ewarn "export LC_NUMERIC=C' in your .bashrc file" |
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ewarn "Otherwise please consult your system manager" |
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epause 10 |
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fi |
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|
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grep -q sse2 /proc/cpuinfo || einfo "The CPU is lacking SSE2! You should use the cluster at EMBL-Hamburg." |
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einfo |
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elog "The ccp4 interface file could be found in /usr/share/doc/"${P} |
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elog "To install, run ccp4i as root, navigate to System Administration," |
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elog "Install/uninstall tasks, then choose ARP_wARP_CCP4I6.tar.gz." |
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} |
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|
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pkg_postrm() { |
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python_mod_cleanup "${ROOT}"/opt/${PN}/byte-code/python-${PYVER} |
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} |
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