[gentoo-commits] proj/sci:master commit in: sci-biology/fastqc/

[Martin Mokrejs]

commit:     65c4d36d3d13f260278569bed39a4a7a467f3468
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 18:19:37 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 18:19:37 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=65c4d36d

sci-biology/fastqc: reverse-engineered where sam-1.32.jar is likely coming from

Package-Manager: portage-2.2.7

---
 sci-biology/fastqc/ChangeLog            | 5 +++++
 sci-biology/fastqc/fastqc-0.10.1.ebuild | 3 ++-
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog
index 69015c4..53e3150 100644
--- a/sci-biology/fastqc/ChangeLog
+++ b/sci-biology/fastqc/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  23 Mar 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
+  fastqc-0.10.1.ebuild:
+  sci-biology/fastqc: reverse-engineered where sam-1.32.jar is likely coming
+  from
+
 *fastqc-0.10.1 (23 Mar 2014)
 
   23 Mar 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>

diff --git a/sci-biology/fastqc/fastqc-0.10.1.ebuild b/sci-biology/fastqc/fastqc-0.10.1.ebuild
index 5274554..14bd8ad 100644
--- a/sci-biology/fastqc/fastqc-0.10.1.ebuild
+++ b/sci-biology/fastqc/fastqc-0.10.1.ebuild
@@ -25,5 +25,6 @@ src_install(){
 	dobin fastqc
 	
 	# TODO: need to compile java in uk/ac/babraham/FastQC/
-	# and decide whether jbzip2-0.9.jar and sam-1.32.jar are standard java libs and from samtools or whetehr not
+	# and decide whether jbzip2-0.9.jar is a standard java lib or not
+	# ignore the sam-1.32.jar, that is likely library already in sci-biology/picard
 }