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jlec 15/02/28 10:51:24 |
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Modified: samtools-1.2.ebuild ChangeLog |
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Log: |
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Fix depend rules in make which break due to unbundling of htslib, #541134; use LD_LIBRARY_PATH druing tests |
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(Portage version: 2.2.17/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!) |
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Revision Changes Path |
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1.2 sci-biology/samtools/samtools-1.2.ebuild |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild?rev=1.2&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild?rev=1.2&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild?r1=1.1&r2=1.2 |
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Index: samtools-1.2.ebuild |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild,v |
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retrieving revision 1.1 |
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retrieving revision 1.2 |
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diff -u -r1.1 -r1.2 |
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--- samtools-1.2.ebuild 18 Feb 2015 10:21:10 -0000 1.1 |
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+++ samtools-1.2.ebuild 28 Feb 2015 10:51:24 -0000 1.2 |
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@@ -1,6 +1,6 @@ |
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# Copyright 1999-2015 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild,v 1.1 2015/02/18 10:21:10 jlec Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild,v 1.2 2015/02/28 10:51:24 jlec Exp $ |
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EAPI=5 |
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@@ -61,7 +61,7 @@ |
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HTSLIB=$($(tc-getPKG_CONFIG) --libs htslib) |
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BAMLIB="libbam.so" |
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) |
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- emake "${mymakeargs[@]}" test |
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+ LD_LIBRARY_PATH="${S}" emake "${mymakeargs[@]}" test |
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} |
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src_install() { |
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1.23 sci-biology/samtools/ChangeLog |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?rev=1.23&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?rev=1.23&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?r1=1.22&r2=1.23 |
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v |
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retrieving revision 1.22 |
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retrieving revision 1.23 |
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diff -u -r1.22 -r1.23 |
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--- ChangeLog 18 Feb 2015 10:21:10 -0000 1.22 |
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+++ ChangeLog 28 Feb 2015 10:51:24 -0000 1.23 |
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@@ -1,6 +1,11 @@ |
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# ChangeLog for sci-biology/samtools |
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# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.22 2015/02/18 10:21:10 jlec Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.23 2015/02/28 10:51:24 jlec Exp $ |
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+ |
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+ 28 Feb 2015; Justin Lecher <jlec@g.o> |
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+ files/samtools-1.2-buildsystem.patch, samtools-1.2.ebuild: |
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+ Fix depend rules in make which break due to unbundling of htslib, #541134; use |
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+ LD_LIBRARY_PATH druing tests |
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*samtools-1.2 (18 Feb 2015) |
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