| 1 |
commit: a6e8082dd9b651ba5114e1dbb08859e06d52f320 |
| 2 |
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 3 |
AuthorDate: Sun Nov 22 21:18:31 2015 +0000 |
| 4 |
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 5 |
CommitDate: Sun Nov 22 21:18:31 2015 +0000 |
| 6 |
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a6e8082d |
| 7 |
|
| 8 |
sci-biology/ncbi-blast+-2.2.31: version bump, seems that some parts of the ncbi-blast+-2.2.30__fix_lib_deps.patch could/should be re-used |
| 9 |
|
| 10 |
Package-Manager: portage-2.2.18 |
| 11 |
|
| 12 |
sci-biology/ncbi-blast+/ChangeLog | 8 ++++++++ |
| 13 |
...{fix_lib_deps.patch => ncbi-blast+-2.2.30__fix_lib_deps.patch} | 0 |
| 14 |
sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild | 2 +- |
| 15 |
.../{ncbi-blast+-2.2.30.ebuild => ncbi-blast+-2.2.31.ebuild} | 5 ++++- |
| 16 |
4 files changed, 13 insertions(+), 2 deletions(-) |
| 17 |
|
| 18 |
diff --git a/sci-biology/ncbi-blast+/ChangeLog b/sci-biology/ncbi-blast+/ChangeLog |
| 19 |
index 4570694..4e01710 100644 |
| 20 |
--- a/sci-biology/ncbi-blast+/ChangeLog |
| 21 |
+++ b/sci-biology/ncbi-blast+/ChangeLog |
| 22 |
@@ -2,6 +2,14 @@ |
| 23 |
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
| 24 |
# $Id$ |
| 25 |
|
| 26 |
+*ncbi-blast+-2.2.31 (22 Nov 2015) |
| 27 |
+ |
| 28 |
+ 22 Nov 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
| 29 |
+ +files/ncbi-blast+-2.2.30__fix_lib_deps.patch, +ncbi-blast+-2.2.31.ebuild, |
| 30 |
+ -files/fix_lib_deps.patch, ncbi-blast+-2.2.30.ebuild: |
| 31 |
+ sci-biology/ncbi-blast+-2.2.31: version bump, seems that some parts of the |
| 32 |
+ ncbi-blast+-2.2.30__fix_lib_deps.patch could/should be re-used |
| 33 |
+ |
| 34 |
17 Jul 2015; Andrew Savchenko <bircoph@g.o> metadata.xml: |
| 35 |
Add sqlite3 flag description. |
| 36 |
|
| 37 |
|
| 38 |
diff --git a/sci-biology/ncbi-blast+/files/fix_lib_deps.patch b/sci-biology/ncbi-blast+/files/ncbi-blast+-2.2.30__fix_lib_deps.patch |
| 39 |
similarity index 100% |
| 40 |
rename from sci-biology/ncbi-blast+/files/fix_lib_deps.patch |
| 41 |
rename to sci-biology/ncbi-blast+/files/ncbi-blast+-2.2.30__fix_lib_deps.patch |
| 42 |
|
| 43 |
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild |
| 44 |
index 31152c5..3008025 100644 |
| 45 |
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild |
| 46 |
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild |
| 47 |
@@ -125,7 +125,7 @@ src_prepare() { |
| 48 |
## epatch ${PATCHES[@]} |
| 49 |
|
| 50 |
# use a Debian patch from http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ncbi-blast%2B/trunk/debian/patches/fix_lib_deps?revision=18535&view=markup |
| 51 |
- epatch "${FILESDIR}"/fix_lib_deps.patch |
| 52 |
+ epatch "${FILESDIR}"/"${P}"__fix_lib_deps.patch |
| 53 |
# make sure this one is the last one and contains the actual patches applied unless we can have autoconf-2.59 or 2.60 |
| 54 |
# https://bugs.gentoo.org/show_bug.cgi?id=514706 |
| 55 |
|
| 56 |
|
| 57 |
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild |
| 58 |
similarity index 98% |
| 59 |
copy from sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild |
| 60 |
copy to sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild |
| 61 |
index 31152c5..9b3c9b2 100644 |
| 62 |
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild |
| 63 |
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild |
| 64 |
@@ -125,7 +125,10 @@ src_prepare() { |
| 65 |
## epatch ${PATCHES[@]} |
| 66 |
|
| 67 |
# use a Debian patch from http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ncbi-blast%2B/trunk/debian/patches/fix_lib_deps?revision=18535&view=markup |
| 68 |
- epatch "${FILESDIR}"/fix_lib_deps.patch |
| 69 |
+ # the patches for 2.2.30+ do not apply to 2.2.31, mostly DLL_LIB is gone but somewhere |
| 70 |
+ # it is still present, plus in a few places was something else patched |
| 71 |
+ # staying without any patches for now and lets see is it works on Gentoo |
| 72 |
+ # epatch "${FILESDIR}"/fix_lib_deps.patch |
| 73 |
# make sure this one is the last one and contains the actual patches applied unless we can have autoconf-2.59 or 2.60 |
| 74 |
# https://bugs.gentoo.org/show_bug.cgi?id=514706 |
Archives