[gentoo-commits] gentoo-x86 commit in sci-chemistry/apbs: ChangeLog metadata.xml apbs-1.2.0.ebuild apbs-0.5.0.ebuild apbs-0.5.1.ebuild

[Markus Dittrich (markusle)]

markusle    09/11/03 05:30:07

  Modified:             ChangeLog metadata.xml
  Added:                apbs-1.2.0.ebuild
  Removed:              apbs-0.5.0.ebuild apbs-0.5.1.ebuild
  Log:
  Version bump (fixes bug #262905) and removed old ebuilds.
  (Portage version: 2.1.7.3/cvs/Linux x86_64)

Revision  Changes    Path
1.22                 sci-chemistry/apbs/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/apbs/ChangeLog?rev=1.22&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/apbs/ChangeLog?rev=1.22&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/apbs/ChangeLog?r1=1.21&r2=1.22

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v
retrieving revision 1.21
retrieving revision 1.22
diff -u -r1.21 -r1.22
--- ChangeLog	6 May 2009 21:05:52 -0000	1.21
+++ ChangeLog	3 Nov 2009 05:30:06 -0000	1.22
@@ -1,6 +1,17 @@
 # ChangeLog for sci-chemistry/apbs
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.21 2009/05/06 21:05:52 maekke Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.22 2009/11/03 05:30:06 markusle Exp $
+
+*apbs-1.2.0 (03 Nov 2009)
+
+  03 Nov 2009; Markus Dittrich <markusle@g.o> -apbs-0.5.0.ebuild,
+  -apbs-0.5.1.ebuild, +apbs-1.2.0.ebuild, +files/apbs-1.2.0-contrib.patch,
+  +files/apbs-1.2.0-install-fix.patch, +files/apbs-1.2.0-link.patch,
+  -files/apbs-examples-gentoo.patch, -files/apbs-gcc4-gentoo.patch,
+  metadata.xml:
+  Version bump (fixes bug #262905) and removed old ebuilds. Currently 
+  missing is opal support (needs keywording by ppc) as well as fetk 
+  support. Thanks much to Justin Lecher for his ebuild.
 
   06 May 2009; Markus Meier <maekke@g.o> apbs-1.0.0-r1.ebuild:
   amd64/x86 stable, bug #250903



1.4                  sci-chemistry/apbs/metadata.xml

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/apbs/metadata.xml?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/apbs/metadata.xml?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/apbs/metadata.xml?r1=1.3&r2=1.4

Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/metadata.xml,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- metadata.xml	20 Sep 2006 05:09:00 -0000	1.3
+++ metadata.xml	3 Nov 2009 05:30:06 -0000	1.4
@@ -6,4 +6,7 @@
         <name>Markus Dittrich</name>
     </maintainer>
 	<herd>sci-chemistry</herd>
+	<use>
+		<flag name='arpack'>Include support for arpack libs</flag>
+	</use>
 </pkgmetadata>



1.1                  sci-chemistry/apbs/apbs-1.2.0.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/apbs/apbs-1.2.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/apbs/apbs-1.2.0.ebuild?rev=1.1&content-type=text/plain

Index: apbs-1.2.0.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.2.0.ebuild,v 1.1 2009/11/03 05:30:06 markusle Exp $

EAPI="2"

inherit eutils fortran autotools python versionator flag-o-matic

MY_PV=$(get_version_component_range 1-2)
MY_P="${PN}-${MY_PV}-source"
S="${WORKDIR}"/"${MY_P}"

DESCRIPTION=" Software for evaluating the electrostatic properties of nanoscale biomolecular systems"
LICENSE="BSD"
HOMEPAGE="http://apbs.sourceforge.net/"
SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz"

SLOT="0"
IUSE="arpack blas doc mpi python openmp"
KEYWORDS="~x86 ~amd64 ~ppc"

DEPEND="dev-libs/maloc[mpi=]
	blas? ( virtual/blas )
	python? ( dev-lang/python )
	sys-libs/readline
	arpack? ( sci-libs/arpack )
	mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"

FORTRAN="g77 gfortran ifc"

src_prepare() {
	python_version

	epatch "${FILESDIR}"/${P}-install-fix.patch
	epatch "${FILESDIR}"/${P}-contrib.patch
	epatch "${FILESDIR}"/${P}-link.patch
	sed "s:GENTOO_PKG_NAME:${PN}:g" \
	-i Makefile.am || die "Cannot correct package name"
	eautoreconf
}

src_configure() {
	local myconf="--docdir=/usr/share/doc/${PF}"
	use blas && myconf="${myconf} --with-blas=-lblas"
	use arpack && myconf="${myconf} --with-arpack=/usr/$(get_libdir)"

	# check which mpi version is installed and tell configure
	if use mpi; then
		export CC="/usr/bin/mpicc"
		export F77="/usr/bin/mpif77"

		if has_version sys-cluster/mpich; then
	 		myconf="${myconf} --with-mpich=/usr"
		elif has_version sys-cluster/mpich2; then
			myconf="${myconf} --with-mpich2=/usr"
		elif has_version sys-cluster/lam-mpi; then
			myconf="${myconf} --with-lam=/usr"
		elif has_version sys-cluster/openmpi; then
			myconf="${myconf} --with-openmpi=/usr"
		fi
	fi || die "Failed to select proper mpi implementation"

	# apbs' configure's openmp detection is broken; we'll
	# work around this until it is fixed
	if use openmp; then
		append-flags -fopenmp
	else
		myconf="${myconf} --disable-openmp"
	fi

	econf $(use_enable python) \
		--disable-maloc-rebuild \
		${myconf} || die "configure failed"
}

src_compile() {
	emake -j1 || die "make failed"
}

src_test() {
	cd examples && make test \
		|| die "Tests failed"
}

src_install() {
	emake -j1 DESTDIR="${D}" install \
		|| die "make install failed"

	dodoc AUTHORS INSTALL README NEWS ChangeLog \
		|| die "Failed to install docs"

	if use doc; then
		dohtml -r doc/* || die "Failed to install html docs"
	fi
}