[gentoo-commits] repo/gentoo:master commit in: profiles/, sci-biology/embassy-meme/, sci-biology/embassy-meme/files/

[Michał Górny]

commit:     96c3a9acc9ec867d071248428194fb3214fd4107
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Fri Oct  9 07:33:56 2020 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Fri Oct  9 07:35:00 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=96c3a9ac

sci-biology/embassy-meme: Remove last-rited pkg

Closes: https://bugs.gentoo.org/735446
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 profiles/package.mask                              |   1 -
 sci-biology/embassy-meme/Manifest                  |   1 -
 .../embassy-meme/embassy-meme-4.7.660.ebuild       |  17 ----
 .../embassy-meme-4.7.650_fix-build-system.patch    | 100 ---------------------
 sci-biology/embassy-meme/metadata.xml              |  11 ---
 5 files changed, 130 deletions(-)

diff --git a/profiles/package.mask b/profiles/package.mask
index 0ba68128733..f8f963cefb2 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -515,7 +515,6 @@ net-misc/ris-linux
 net-wireless/mousejack
 net-wireless/python-wifi
 sci-biology/amos
-sci-biology/embassy-meme
 
 # Arfrever Frehtes Taifersar Arahesis <arfrever.fta@×××××.com> (2020-09-01)
 # Mismatched version (bug #695022). Masked to force upgrade to 2.0.4_pre20200306162733.

diff --git a/sci-biology/embassy-meme/Manifest b/sci-biology/embassy-meme/Manifest
deleted file mode 100644
index 551af7aef93..00000000000
--- a/sci-biology/embassy-meme/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST embassy-meme-4.7.660.tar.gz 622448 BLAKE2B 93bbbe3de085aa2cd843349f8397b2d1f547be62afdb7deb30eec90a891f7825c847b92754bd956388b1bfe0250cabcbc7ad68f7d0378748a7949001016d344c SHA512 0536531b198aac09a9fe6c17cf1c60c766789c94a7f83f743a90aaa65061c95534bf398c53611a34549b7ec1a4928fdc45fe0d2553f25f85eeda41f90c2e8c6f

diff --git a/sci-biology/embassy-meme/embassy-meme-4.7.660.ebuild b/sci-biology/embassy-meme/embassy-meme-4.7.660.ebuild
deleted file mode 100644
index 8752e78d8fc..00000000000
--- a/sci-biology/embassy-meme/embassy-meme-4.7.660.ebuild
+++ /dev/null
@@ -1,17 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-EBO_DESCRIPTION="MEME - Multiple Em for Motif Elicitation"
-
-EBO_EAUTORECONF=1
-
-inherit emboss-r2
-
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-RDEPEND="sci-biology/meme"
-
-S="${WORKDIR}/MEME-4.7.650"
-PATCHES=( "${FILESDIR}"/${PN}-4.7.650_fix-build-system.patch )

diff --git a/sci-biology/embassy-meme/files/embassy-meme-4.7.650_fix-build-system.patch b/sci-biology/embassy-meme/files/embassy-meme-4.7.650_fix-build-system.patch
deleted file mode 100644
index 56f5814e1ef..00000000000
--- a/sci-biology/embassy-meme/files/embassy-meme-4.7.650_fix-build-system.patch
+++ /dev/null
@@ -1,100 +0,0 @@
- configure.ac    | 49 +++++++------------------------------------------
- src/Makefile.am |  6 ++----
- 2 files changed, 9 insertions(+), 46 deletions(-)
-
-diff --git a/configure.ac b/configure.ac
-index 391989f..d921f25 100644
---- a/configure.ac
-+++ b/configure.ac
-@@ -635,33 +635,6 @@ AS_CASE([${host_os}],
- 
- 
- 
--dnl PCRE library definitions - see the MAJOR and MINOR values
--dnl to see which version's configure.in these lines come from
--
--dnl Provide the current PCRE version information. Do not use numbers
--dnl with leading zeros for the minor version, as they end up in a C
--dnl macro, and may be treated as octal constants. Stick to single
--dnl digits for minor numbers less than 10. There are unlikely to be
--dnl that many releases anyway.
--
--PCRE_MAJOR="7"
--PCRE_MINOR="9"
--PCRE_DATE="11-Apr-2009"
--PCRE_VERSION="${PCRE_MAJOR}.${PCRE_MINOR}"
--
--dnl Default values for miscellaneous macros
--
--POSIX_MALLOC_THRESHOLD="-DPOSIX_MALLOC_THRESHOLD=10"
--
--dnl Provide versioning information for libtool shared libraries that
--dnl are built by default on Unix systems.
--
--PCRE_LIB_VERSION="0:1:0"
--PCRE_POSIXLIB_VERSION="0:0:0"
--
--
--
--
- dnl FIXME: This does no longer seem required with Autoconf 2.67?
- dnl Intel MacOSX 10.6 puts X11 in a non-standard place
- dnl AS_IF([test "x${with_x}" != "xno"],
-@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL
- 
- 
- 
--dnl "Export" these variables for PCRE
--
--AC_SUBST([HAVE_MEMMOVE])
--AC_SUBST([HAVE_STRERROR])
--AC_SUBST([PCRE_MAJOR])
--AC_SUBST([PCRE_MINOR])
--AC_SUBST([PCRE_DATE])
--AC_SUBST([PCRE_VERSION])
--AC_SUBST([PCRE_LIB_VERSION])
--AC_SUBST([PCRE_POSIXLIB_VERSION])
--AC_SUBST([POSIX_MALLOC_THRESHOLD])
--
--
--
--
- dnl Test if --enable-localforce given
- locallink="no"
- embprefix="/usr/local"
-@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs],
- AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"])
- 
- 
-+AS_IF([test "x${enable_systemlibs}" = "xyes"],
-+[
-+dnl using system libraries
-+  PKG_CHECK_MODULES([PLPLOT], [plplotd],
-+  [],[PKG_CHECK_MODULES([PLPLOT], [plplot])]
-+  )
-+])
- 
- 
- # Enable the purify tool: --enable-purify, sets CC and LIBTOOL
-diff --git a/src/Makefile.am b/src/Makefile.am
-index 1600399..9f28162 100644
---- a/src/Makefile.am
-+++ b/src/Makefile.am
-@@ -17,9 +17,7 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \
- 	-I../../../ajax/ensembl -I../../../ajax/ajaxdb \
- 	-I../../../ajax/acd -I../../../plplot
- else
--AM_CPPFLAGS = -I${embprefix}/include -I${embprefix}/include/eplplot \
--	$(NLINCLUDES) \
--	-I${embprefix}/include/epcre
-+AM_CPPFLAGS = -I${embprefix}/include $(NLINCLUDES) $(PLPLOT_CFLAGS)
- endif
- 
- if ISSHARED
-@@ -60,5 +58,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \
- 	$(XLIB)
- else
- LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
--        -lajax -lepcre $(NLADD) -leplplot $(XLIB)
-+        -lajax $(NLADD) $(XLIB)
- endif

diff --git a/sci-biology/embassy-meme/metadata.xml b/sci-biology/embassy-meme/metadata.xml
deleted file mode 100644
index d1b9a7602ec..00000000000
--- a/sci-biology/embassy-meme/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-biology@g.o</email>
-    <name>Gentoo Biology Project</name>
-  </maintainer>
-  <upstream>
-    <remote-id type="sourceforge">emboss</remote-id>
-  </upstream>
-</pkgmetadata>