[gentoo-commits] proj/sci:master commit in: sci-biology/scaffold_builder/

[Martin Mokrejs]

commit:     e5dded97493ddde7b18b92023fc77bb7822f64ad
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 20:31:23 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 20:31:23 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e5dded97

sci-biology/scaffold_builder: new package but with a missing LICENSE

---
 sci-biology/scaffold_builder/ChangeLog             | 10 +++++++
 sci-biology/scaffold_builder/metadata.xml          |  9 +++++++
 .../scaffold_builder-20130403.ebuild               | 31 ++++++++++++++++++++++
 3 files changed, 50 insertions(+)

diff --git a/sci-biology/scaffold_builder/ChangeLog b/sci-biology/scaffold_builder/ChangeLog
new file mode 100644
index 0000000..72c9e84
--- /dev/null
+++ b/sci-biology/scaffold_builder/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/scaffold_builder
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*scaffold_builder-20130403 (23 Mar 2014)
+
+  23 Mar 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
+  +scaffold_builder-20130403.ebuild, +metadata.xml:
+  new package but with a missing LICENSE
+

diff --git a/sci-biology/scaffold_builder/metadata.xml b/sci-biology/scaffold_builder/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/scaffold_builder/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild b/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild
new file mode 100644
index 0000000..f32c0cbf
--- /dev/null
+++ b/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=4
+
+S="${WORKDIR}"
+
+DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds using a reference assembly"
+HOMEPAGE="http://sourceforge.net/projects/scaffold-b/"
+SRC_URI="http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.py
+	http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2_help.doc
+	http://downloads.sourceforge.net/project/scaffold-b/Manual_v2.1.pdf"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	dev-lang/python"
+
+src_install(){
+	echo "#! /usr/bin/env python" > scaffold_builder_v2.py || die
+	cat "${DISTDIR}"/scaffold_builder_v2.py >> scaffold_builder_v2.py || die
+	dobin scaffold_builder_v2.py
+	dodoc "${DISTDIR}"/scaffold_builder_v2_help.doc
+	cp "${DISTDIR}"/Manual_v2.1.pdf scaffold_builder_v2_Manual.pdf || die
+	dodoc scaffold_builder_v2_Manual.pdf
+}