Gentoo Archives: gentoo-commits

From: Horea Christian <horea.christ@×××××.com>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx/files/, sci-chemistry/shiftx/
Date: Mon, 28 Sep 2020 10:01:14
Message-Id: 1601287245.147e93b9e5f88467c7658850f251a32a68c8c24a.chymera@gentoo
1 commit: 147e93b9e5f88467c7658850f251a32a68c8c24a
2 Author: Horea Christian <chr <AT> chymera <DOT> eu>
3 AuthorDate: Mon Sep 28 10:00:45 2020 +0000
4 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
5 CommitDate: Mon Sep 28 10:00:45 2020 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=147e93b9
7
8 sci-chemistry/shiftx: removed discontinued package
9
10 Package-Manager: Portage-3.0.8, Repoman-3.0.1
11 Signed-off-by: Horea Christian <chr <AT> chymera.eu>
12
13 sci-chemistry/shiftx/files/1.1-Makefile.patch | 27 -----------------
14 sci-chemistry/shiftx/files/1.1-bfr-overflow.patch | 16 ----------
15 sci-chemistry/shiftx/metadata.xml | 8 -----
16 sci-chemistry/shiftx/shiftx-1.1.ebuild | 37 -----------------------
17 4 files changed, 88 deletions(-)
18
19 diff --git a/sci-chemistry/shiftx/files/1.1-Makefile.patch b/sci-chemistry/shiftx/files/1.1-Makefile.patch
20 deleted file mode 100644
21 index f208d087f..000000000
22 --- a/sci-chemistry/shiftx/files/1.1-Makefile.patch
23 +++ /dev/null
24 @@ -1,27 +0,0 @@
25 - Makefile | 6 +++---
26 - 1 file changed, 3 insertions(+), 3 deletions(-)
27 -
28 -diff --git a/Makefile b/Makefile
29 -index 5401c07..ffd8157 100644
30 ---- a/Makefile
31 -+++ b/Makefile
32 -@@ -6,8 +6,8 @@
33 - # E-Mail: anip@×××××××××××××××××××××××××.ca
34 - #
35 - #CC=gcc -Xcpluscomm -cckr
36 --CC=/usr/bin/gcc
37 --CFLAGS=-O
38 -+#CC=/usr/bin/gcc
39 -+#CFLAGS=-O
40 - SYSLIB=
41 - INCLUDES=-I/usr/include
42 - LIBS=$(SYSLIB) -lm
43 -@@ -25,7 +25,7 @@ OBJS=Main.o Nn.o Ssbond.o Residue.o Hetatm.o Vector.o Torison.o Cs.o Phipsi.o \
44 - all: shiftx
45 -
46 - shiftx: $(OBJS)
47 -- $(CC) $(OBJS) $(CFLAGS) $(LIBS) -o $@
48 -+ $(CC) $(CFLAGS) $(LDFLAGS) $(OBJS) $(LIBS) -o $@
49 -
50 - Main.o: Main.c main.h states.h nn.h ssbond.h residue.h hetatm.h cs.h \
51 - phipsi.h torison.h hydrogens.h rings.h es.h proline.h hbond.h \
52
53 diff --git a/sci-chemistry/shiftx/files/1.1-bfr-overflow.patch b/sci-chemistry/shiftx/files/1.1-bfr-overflow.patch
54 deleted file mode 100644
55 index 68507a364..000000000
56 --- a/sci-chemistry/shiftx/files/1.1-bfr-overflow.patch
57 +++ /dev/null
58 @@ -1,16 +0,0 @@
59 - Display.c | 2 +-
60 - 1 file changed, 1 insertion(+), 1 deletion(-)
61 -
62 -diff --git a/Display.c b/Display.c
63 -index 671d3ee..9a03c48 100644
64 ---- a/Display.c
65 -+++ b/Display.c
66 -@@ -85,7 +85,7 @@ DISPLAY_DATA *CreateDisplayData( int len, int prop, int nuc )
67 - void display_selected_nucleus( DISPLAY_DATA *d )
68 - {
69 - int i, j;
70 -- char nucleus[5];
71 -+ char nucleus[8];
72 -
73 - /* Print Header Information */
74 -
75
76 diff --git a/sci-chemistry/shiftx/metadata.xml b/sci-chemistry/shiftx/metadata.xml
77 deleted file mode 100644
78 index da36ecbfc..000000000
79 --- a/sci-chemistry/shiftx/metadata.xml
80 +++ /dev/null
81 @@ -1,8 +0,0 @@
82 -<?xml version="1.0" encoding="UTF-8"?>
83 -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
84 -<pkgmetadata>
85 - <maintainer type="project">
86 - <email>sci-chemistry@g.o</email>
87 - <name>Gentoo Chemistry Project</name>
88 - </maintainer>
89 -</pkgmetadata>
90
91 diff --git a/sci-chemistry/shiftx/shiftx-1.1.ebuild b/sci-chemistry/shiftx/shiftx-1.1.ebuild
92 deleted file mode 100644
93 index c25718308..000000000
94 --- a/sci-chemistry/shiftx/shiftx-1.1.ebuild
95 +++ /dev/null
96 @@ -1,37 +0,0 @@
97 -# Copyright 1999-2014 Gentoo Foundation
98 -# Distributed under the terms of the GNU General Public License v2
99 -
100 -EAPI=5
101 -
102 -inherit eutils toolchain-funcs
103 -
104 -DESCRIPTION="Prediction of 1H, 13C and 15N chemical shifts for proteins"
105 -HOMEPAGE="http://shiftx.wishartlab.com/"
106 -SRC_URI="http://shiftx.wishartlab.com/download/${PN}.tar.gz -> ${P}.tar.gz"
107 -
108 -LICENSE="all-rights-reserved"
109 -SLOT="0"
110 -KEYWORDS="~amd64 ~x86"
111 -IUSE=""
112 -
113 -DEPEND=""
114 -RDEPEND="sci-chemistry/shiftx2"
115 -
116 -S="${WORKDIR}"/${PN}
117 -
118 -DOCS="README FEATURES *.pdb *.out"
119 -
120 -src_prepare() {
121 - epatch \
122 - "${FILESDIR}"/${PV}-Makefile.patch \
123 - "${FILESDIR}"/${PV}-bfr-overflow.patch
124 -}
125 -
126 -src_compile() {
127 - emake CC="$(tc-getCC)"
128 -}
129 -
130 -src_install() {
131 - dobin ${PN}
132 - dodoc ${DOCS}
133 -}