1 |
commit: 147e93b9e5f88467c7658850f251a32a68c8c24a |
2 |
Author: Horea Christian <chr <AT> chymera <DOT> eu> |
3 |
AuthorDate: Mon Sep 28 10:00:45 2020 +0000 |
4 |
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> |
5 |
CommitDate: Mon Sep 28 10:00:45 2020 +0000 |
6 |
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=147e93b9 |
7 |
|
8 |
sci-chemistry/shiftx: removed discontinued package |
9 |
|
10 |
Package-Manager: Portage-3.0.8, Repoman-3.0.1 |
11 |
Signed-off-by: Horea Christian <chr <AT> chymera.eu> |
12 |
|
13 |
sci-chemistry/shiftx/files/1.1-Makefile.patch | 27 ----------------- |
14 |
sci-chemistry/shiftx/files/1.1-bfr-overflow.patch | 16 ---------- |
15 |
sci-chemistry/shiftx/metadata.xml | 8 ----- |
16 |
sci-chemistry/shiftx/shiftx-1.1.ebuild | 37 ----------------------- |
17 |
4 files changed, 88 deletions(-) |
18 |
|
19 |
diff --git a/sci-chemistry/shiftx/files/1.1-Makefile.patch b/sci-chemistry/shiftx/files/1.1-Makefile.patch |
20 |
deleted file mode 100644 |
21 |
index f208d087f..000000000 |
22 |
--- a/sci-chemistry/shiftx/files/1.1-Makefile.patch |
23 |
+++ /dev/null |
24 |
@@ -1,27 +0,0 @@ |
25 |
- Makefile | 6 +++--- |
26 |
- 1 file changed, 3 insertions(+), 3 deletions(-) |
27 |
- |
28 |
-diff --git a/Makefile b/Makefile |
29 |
-index 5401c07..ffd8157 100644 |
30 |
---- a/Makefile |
31 |
-+++ b/Makefile |
32 |
-@@ -6,8 +6,8 @@ |
33 |
- # E-Mail: anip@×××××××××××××××××××××××××.ca |
34 |
- # |
35 |
- #CC=gcc -Xcpluscomm -cckr |
36 |
--CC=/usr/bin/gcc |
37 |
--CFLAGS=-O |
38 |
-+#CC=/usr/bin/gcc |
39 |
-+#CFLAGS=-O |
40 |
- SYSLIB= |
41 |
- INCLUDES=-I/usr/include |
42 |
- LIBS=$(SYSLIB) -lm |
43 |
-@@ -25,7 +25,7 @@ OBJS=Main.o Nn.o Ssbond.o Residue.o Hetatm.o Vector.o Torison.o Cs.o Phipsi.o \ |
44 |
- all: shiftx |
45 |
- |
46 |
- shiftx: $(OBJS) |
47 |
-- $(CC) $(OBJS) $(CFLAGS) $(LIBS) -o $@ |
48 |
-+ $(CC) $(CFLAGS) $(LDFLAGS) $(OBJS) $(LIBS) -o $@ |
49 |
- |
50 |
- Main.o: Main.c main.h states.h nn.h ssbond.h residue.h hetatm.h cs.h \ |
51 |
- phipsi.h torison.h hydrogens.h rings.h es.h proline.h hbond.h \ |
52 |
|
53 |
diff --git a/sci-chemistry/shiftx/files/1.1-bfr-overflow.patch b/sci-chemistry/shiftx/files/1.1-bfr-overflow.patch |
54 |
deleted file mode 100644 |
55 |
index 68507a364..000000000 |
56 |
--- a/sci-chemistry/shiftx/files/1.1-bfr-overflow.patch |
57 |
+++ /dev/null |
58 |
@@ -1,16 +0,0 @@ |
59 |
- Display.c | 2 +- |
60 |
- 1 file changed, 1 insertion(+), 1 deletion(-) |
61 |
- |
62 |
-diff --git a/Display.c b/Display.c |
63 |
-index 671d3ee..9a03c48 100644 |
64 |
---- a/Display.c |
65 |
-+++ b/Display.c |
66 |
-@@ -85,7 +85,7 @@ DISPLAY_DATA *CreateDisplayData( int len, int prop, int nuc ) |
67 |
- void display_selected_nucleus( DISPLAY_DATA *d ) |
68 |
- { |
69 |
- int i, j; |
70 |
-- char nucleus[5]; |
71 |
-+ char nucleus[8]; |
72 |
- |
73 |
- /* Print Header Information */ |
74 |
- |
75 |
|
76 |
diff --git a/sci-chemistry/shiftx/metadata.xml b/sci-chemistry/shiftx/metadata.xml |
77 |
deleted file mode 100644 |
78 |
index da36ecbfc..000000000 |
79 |
--- a/sci-chemistry/shiftx/metadata.xml |
80 |
+++ /dev/null |
81 |
@@ -1,8 +0,0 @@ |
82 |
-<?xml version="1.0" encoding="UTF-8"?> |
83 |
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
84 |
-<pkgmetadata> |
85 |
- <maintainer type="project"> |
86 |
- <email>sci-chemistry@g.o</email> |
87 |
- <name>Gentoo Chemistry Project</name> |
88 |
- </maintainer> |
89 |
-</pkgmetadata> |
90 |
|
91 |
diff --git a/sci-chemistry/shiftx/shiftx-1.1.ebuild b/sci-chemistry/shiftx/shiftx-1.1.ebuild |
92 |
deleted file mode 100644 |
93 |
index c25718308..000000000 |
94 |
--- a/sci-chemistry/shiftx/shiftx-1.1.ebuild |
95 |
+++ /dev/null |
96 |
@@ -1,37 +0,0 @@ |
97 |
-# Copyright 1999-2014 Gentoo Foundation |
98 |
-# Distributed under the terms of the GNU General Public License v2 |
99 |
- |
100 |
-EAPI=5 |
101 |
- |
102 |
-inherit eutils toolchain-funcs |
103 |
- |
104 |
-DESCRIPTION="Prediction of 1H, 13C and 15N chemical shifts for proteins" |
105 |
-HOMEPAGE="http://shiftx.wishartlab.com/" |
106 |
-SRC_URI="http://shiftx.wishartlab.com/download/${PN}.tar.gz -> ${P}.tar.gz" |
107 |
- |
108 |
-LICENSE="all-rights-reserved" |
109 |
-SLOT="0" |
110 |
-KEYWORDS="~amd64 ~x86" |
111 |
-IUSE="" |
112 |
- |
113 |
-DEPEND="" |
114 |
-RDEPEND="sci-chemistry/shiftx2" |
115 |
- |
116 |
-S="${WORKDIR}"/${PN} |
117 |
- |
118 |
-DOCS="README FEATURES *.pdb *.out" |
119 |
- |
120 |
-src_prepare() { |
121 |
- epatch \ |
122 |
- "${FILESDIR}"/${PV}-Makefile.patch \ |
123 |
- "${FILESDIR}"/${PV}-bfr-overflow.patch |
124 |
-} |
125 |
- |
126 |
-src_compile() { |
127 |
- emake CC="$(tc-getCC)" |
128 |
-} |
129 |
- |
130 |
-src_install() { |
131 |
- dobin ${PN} |
132 |
- dodoc ${DOCS} |
133 |
-} |