[gentoo-commits] repo/gentoo:master commit in: dev-python/numpy/files/, dev-python/numpy/

[Justin Lecher]

commit:     65d331f931f54d7c099446acf1eb1796e61ce990
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Apr 14 19:34:39 2017 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Apr 14 19:34:39 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=65d331f9

dev-python/numpy: Version Bump

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=607914
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 dev-python/numpy/Manifest                          |   1 +
 .../files/numpy-1.12.1-no-hardcode-blas.patch      |  72 +++++++++
 dev-python/numpy/numpy-1.12.1.ebuild               | 164 +++++++++++++++++++++
 3 files changed, 237 insertions(+)

diff --git a/dev-python/numpy/Manifest b/dev-python/numpy/Manifest
index 7c95901d637..856d490efce 100644
--- a/dev-python/numpy/Manifest
+++ b/dev-python/numpy/Manifest
@@ -2,6 +2,7 @@ DIST numpy-1.10.1.tar.gz 4048478 SHA256 8b9f453f29ce96a14e625100d3dcf8926301d36c
 DIST numpy-1.10.2.tar.gz 4055005 SHA256 23a3befdf955db4d616f8bb77b324680a80a323e0c42a7e8d7388ef578d8ffa9 SHA512 040db49593f3c53c9b43301eacffc3b5817310f1dbb91fd650efcf5ba65ce7e217549dc5268bc56846f19f1a03dd19470989005aa176531af44d602b3546b007 WHIRLPOOL 30c4b365aac6623241afd72fc30d3a543183205eb23db1366937e39fc50dee862923dd249775fee67cce0199940a57ec1423f1cb0e65ff7c65764c7969d7a76f
 DIST numpy-1.10.4.tar.gz 4069996 SHA256 7356e98fbcc529e8d540666f5a919912752e569150e9a4f8d869c686f14c720b SHA512 57ace46e357d49be0efd904e5ceb9862c626c916987c8798a12de7ae1e06816ad8483439ac4619792a04889631b5998f2397dc601c78dea33a784b4831c19c79 WHIRLPOOL 76946c2543b1cade06d71f83fd507bd818c1090baa9c3ddda7d1f48d48ed23672c5d9de76db890df990c6d8b7b26b71d3ce733c448943ad4177374a957360d1c
 DIST numpy-1.11.2.tar.gz 4178447 SHA256 04db2fbd64e2e7c68e740b14402b25af51418fc43a59d9e54172b38b906b0f69 SHA512 c1818de5c8b92cc2a673149f090cc863b484afd29e8a014ffcf8d0f5e70cf8886c7662dbe45847712dec8ae0412d1cb48b13cceefe3e4ec0e85bb20e4beaa46e WHIRLPOOL 668acc8ada165b57e1b2ab76969affa0098a5746c4ca21ae88cd189c5e6f79bde9d05bf951604d0c0f7400174f1e58f17fa0d662029f0b91cff78118fe3cdb0d
+DIST numpy-1.12.1.zip 4824784 SHA256 a65266a4ad6ec8936a1bc85ce51f8600634a31a258b722c9274a80ff189d9542 SHA512 156319821e4f0cf8d820e977da704aab274b7a4a4b792f6e40d7c0f2827700c990f55f1ca9650523c62c9e937f0e75f336d091d46ca47aaa9875c68fe32bac2a WHIRLPOOL 1ecd1df77d2a64bc6db1910446f60b477ebf5a1cf33ec2e1fced56dbbf1a7df5fef004c7f84f0dccb0ca20ea7ab73c384e4d247eb9700159a18c9a4a51e4db6d
 DIST numpy-1.8.2.tar.gz 3792998 SHA256 6d487fc724780d66746bde264ea71f5cd77d3a39e52ee2b073dcaed63bc669db SHA512 996e6b8e2d42f223e44660f56bf73eb8ab124f400d89218f8f5e4d7c9860ada44a4d7c54526137b0695c7a10f36e8834fbf0d42b7cb20bcdb5d5c245d673385c WHIRLPOOL 0d3a05b1e3c0a1ceb0a7b4818406dbb45506e5f25bc2727d4ff44cc0a0520e6556b3c68ae24dbca37ba9d67ae2defbb3ff9c906d4c2635b29ed44452d70e8311
 DIST numpy-1.9.2.tar.gz 3986067 SHA256 325e5f2b0b434ecb6e6882c7e1034cc6cdde3eeeea87dbc482575199a6aeef2a SHA512 70470ebb9afef5dfd0c83ceb7a9d5f1b7a072b1a9b54b04f04f5ed50fbaedd5b4906bd500472268d478f94df9e749a88698b1ff30f2d80258e7f3fec040617d9 WHIRLPOOL 59f5dc52cb95c7ce80fec3a7feac6cfda1d149596bf6d95c18bd8314e31a8df494b2b470c4cc3d8c296c9fc11c718d70d5b9b5344337175ca75496504c0fd201
 DIST numpy-1.9.3.tar.gz 3984430 SHA256 c3b74d3b9da4ceb11f66abd21e117da8cf584b63a0efbd01a9b7e91b693fbbd6 SHA512 32531cd8d1480a50812454ef8e3b68c0f84b2a4bc5de0df1457070db7f6fd94cdb50e6479a85fa4d1dc569a10d28f6864d5069fcf2a32fa20fa8803476a3df8c WHIRLPOOL a0235594e793625d5e3cef57956f4710587158885f39d7d1267c9845b12fb1d39fb9987ec095720c2d285c7c726383a15471f3629b739b77186470e2c40ba093

diff --git a/dev-python/numpy/files/numpy-1.12.1-no-hardcode-blas.patch b/dev-python/numpy/files/numpy-1.12.1-no-hardcode-blas.patch
new file mode 100644
index 00000000000..81d6084be3d
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.12.1-no-hardcode-blas.patch
@@ -0,0 +1,72 @@
+--- numpy-1.11.1/numpy/distutils/system_info.py
++++ numpy-1.11.1/numpy/distutils/system_info.py
+@@ -312,27 +312,7 @@
+       1 - display warning message
+       2 - raise error
+     """
+-    cl = {'atlas': atlas_info,  # use lapack_opt or blas_opt instead
+-          'atlas_threads': atlas_threads_info,                # ditto
+-          'atlas_blas': atlas_blas_info,
+-          'atlas_blas_threads': atlas_blas_threads_info,
+-          'lapack_atlas': lapack_atlas_info,  # use lapack_opt instead
+-          'lapack_atlas_threads': lapack_atlas_threads_info,  # ditto
+-          'atlas_3_10': atlas_3_10_info,  # use lapack_opt or blas_opt instead
+-          'atlas_3_10_threads': atlas_3_10_threads_info,                # ditto
+-          'atlas_3_10_blas': atlas_3_10_blas_info,
+-          'atlas_3_10_blas_threads': atlas_3_10_blas_threads_info,
+-          'lapack_atlas_3_10': lapack_atlas_3_10_info,  # use lapack_opt instead
+-          'lapack_atlas_3_10_threads': lapack_atlas_3_10_threads_info,  # ditto
+-          'mkl': mkl_info,
+-          # openblas which may or may not have embedded lapack
+-          'openblas': openblas_info,          # use blas_opt instead
+-          # openblas with embedded lapack
+-          'openblas_lapack': openblas_lapack_info, # use blas_opt instead
+-          'blis': blis_info,                  # use blas_opt instead
+-          'lapack_mkl': lapack_mkl_info,      # use lapack_opt instead
+-          'blas_mkl': blas_mkl_info,          # use blas_opt instead
+-          'x11': x11_info,
++    cl = {'x11': x11_info,
+           'fft_opt': fft_opt_info,
+           'fftw': fftw_info,
+           'fftw2': fftw2_info,
+@@ -669,10 +650,7 @@
+         return [b for b in [a.strip() for a in libs.split(',')] if b]
+ 
+     def get_libraries(self, key='libraries'):
+-        if hasattr(self, '_lib_names'):
+-            return self.get_libs(key, default=self._lib_names)
+-        else:
+-            return self.get_libs(key, '')
++        return self.get_libs(key, '')
+ 
+     def library_extensions(self):
+         static_exts = ['.a']
+@@ -1685,7 +1663,7 @@
+             lib = self.has_cblas(info)
+             if lib is not None:
+                 info['language'] = 'c'
+-                info['libraries'] = [lib]
++                info['libraries'] = lib
+                 info['define_macros'] = [('HAVE_CBLAS', None)]
+         self.set_info(**info)
+ 
+@@ -1718,16 +1696,16 @@
+                 # check for cblas lib, and if not present check for blas lib.
+                 try:
+                     c.link_executable(obj, os.path.join(tmpdir, "a.out"),
+-                                      libraries=["cblas"],
++                                      libraries=info["libraries"],
+                                       library_dirs=info['library_dirs'],
+                                       extra_postargs=info.get('extra_link_args', []))
+-                    res = "cblas"
++                    res = info["libraries"]
+                 except distutils.ccompiler.LinkError:
+                     c.link_executable(obj, os.path.join(tmpdir, "a.out"),
+                                       libraries=["blas"],
+                                       library_dirs=info['library_dirs'],
+                                       extra_postargs=info.get('extra_link_args', []))
+-                    res = "blas"
++                    res = ["blas"]
+             except distutils.ccompiler.CompileError:
+                 res = None
+         finally:

diff --git a/dev-python/numpy/numpy-1.12.1.ebuild b/dev-python/numpy/numpy-1.12.1.ebuild
new file mode 100644
index 00000000000..923ecd5f7c4
--- /dev/null
+++ b/dev-python/numpy/numpy-1.12.1.ebuild
@@ -0,0 +1,164 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+PYTHON_REQ_USE="threads(+)"
+
+FORTRAN_NEEDED=lapack
+
+inherit distutils-r1 flag-o-matic fortran-2 multiprocessing toolchain-funcs versionator
+
+DOC_PV="1.11.0"
+DOC_P="${PN}-${DOC_PV}"
+
+DESCRIPTION="Fast array and numerical python library"
+HOMEPAGE="http://www.numpy.org/"
+SRC_URI="
+	mirror://pypi/${PN:0:1}/${PN}/${P}.zip
+	doc? (
+		http://docs.scipy.org/doc/${DOC_P}/${PN}-html-${DOC_PV}.zip
+		http://docs.scipy.org/doc/${DOC_P}/${PN}-ref-${DOC_PV}.pdf
+		http://docs.scipy.org/doc/${DOC_P}/${PN}-user-${DOC_PV}.pdf
+	)"
+# It appears the docs haven't been upgraded, still @ 1.11.0
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris"
+IUSE="doc lapack test"
+
+RDEPEND="lapack? ( virtual/cblas virtual/lapack )"
+DEPEND="${RDEPEND}
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	doc? ( app-arch/unzip )
+	lapack? ( virtual/pkgconfig )
+	test? ( >=dev-python/nose-1.0[${PYTHON_USEDEP}] )"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-no-hardcode-blas.patch
+	"${FILESDIR}"/${PN}-1.11.2-blas_rec_inc_dir.patch
+)
+
+src_unpack() {
+	default
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
+	fi
+}
+
+pc_incdir() {
+	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+		sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libdir() {
+	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
+		sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libs() {
+	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
+		sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+		-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+		| tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
+}
+
+python_prepare_all() {
+	if use lapack; then
+		append-ldflags "$($(tc-getPKG_CONFIG) --libs-only-other cblas lapack)"
+		local libdir="${EPREFIX}"/usr/$(get_libdir)
+		cat >> site.cfg <<-EOF || die
+			[blas]
+			include_dirs = $(pc_incdir cblas)
+			library_dirs = $(pc_libdir cblas blas):${libdir}
+			blas_libs = $(pc_libs cblas blas)
+			[lapack]
+			library_dirs = $(pc_libdir lapack):${libdir}
+			lapack_libs = $(pc_libs lapack)
+		EOF
+	else
+		export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None
+	fi
+
+	export CC="$(tc-getCC) ${CFLAGS}"
+
+	append-flags -fno-strict-aliasing
+
+	# See progress in http://projects.scipy.org/scipy/numpy/ticket/573
+	# with the subtle difference that we don't want to break Darwin where
+	# -shared is not a valid linker argument
+	if [[ ${CHOST} != *-darwin* ]]; then
+		append-ldflags -shared
+	fi
+
+	# only one fortran to link with:
+	# linking with cblas and lapack library will force
+	# autodetecting and linking to all available fortran compilers
+	append-fflags -fPIC
+	if use lapack; then
+		NUMPY_FCONFIG="config_fc --noopt --noarch"
+		# workaround bug 335908
+		[[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+=" --fcompiler=gnu95"
+	fi
+
+	# don't version f2py, we will handle it.
+	sed -i -e '/f2py_exe/s: + os\.path.*$::' numpy/f2py/setup.py || die
+
+	# we don't have f2py-3.3
+	sed \
+		-e 's:test_f2py:_&:g' \
+		-i numpy/tests/test_scripts.py || die
+
+	# QA bug 590464
+	# The .py files from numpy/core/tests are just added, instead
+	# of being bytecode compiled as a proper subdir package.
+	# We trick the buildsystem into accepting it as a bytecode
+	# package by adding a setup.py and an empty __init__.py
+	#cp numpy/{compat/setup.py,core/tests} || die
+	#touch numpy/core/tests/__init__.py || die
+	#sed \
+	#	-e 's:compat:tests:' \
+	#	-i numpy/core/tests/setup.py || die
+	#sed \
+	#	-e "s:config\.add_data_dir('tests'):config\.add_subpackage('tests'):" \
+	#	-i numpy/core/setup.py || die
+
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	distutils-r1_python_compile \
+		$(usex python_targets_python3_5 "" "-j $(makeopts_jobs)") \
+		${NUMPY_FCONFIG}
+}
+
+python_test() {
+	distutils_install_for_testing --single-version-externally-managed --record "${TMPDIR}/record.txt" ${NUMPY_FCONFIG}
+
+	cd "${TMPDIR}" || die
+
+	${EPYTHON} -c "
+import numpy, sys
+r = numpy.test(label='full', verbose=3)
+sys.exit(0 if r.wasSuccessful() else 1)" || die "Tests fail with ${EPYTHON}"
+}
+
+python_install() {
+	distutils-r1_python_install ${NUMPY_FCONFIG}
+}
+
+python_install_all() {
+	DOCS+=( THANKS.txt )
+
+	if use doc; then
+		HTML_DOCS=( "${WORKDIR}"/html/. )
+		DOCS+=( "${DISTDIR}"/${PN}-{user,ref}-${DOC_PV}.pdf )
+	fi
+
+	distutils-r1_python_install_all
+
+	docinto f2py
+	dodoc doc/f2py/*.txt
+	doman doc/f2py/f2py.1
+}