[gentoo-commits] proj/sci:master commit in: sci-chemistry/relion/

[Alexey Shvetsov]

commit:     669fb165704ebae28b3781a18aa215d6f07c8340
Author:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Wed Oct 30 08:03:26 2019 +0000
Commit:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Wed Oct 30 08:03:26 2019 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=669fb165

sci-chemistry/relion: Add relion

Package-Manager: Portage-2.3.78, Repoman-2.3.17
Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org>

 sci-chemistry/relion/metadata.xml        | 16 ++++++++++++
 sci-chemistry/relion/relion-3.0.8.ebuild | 45 ++++++++++++++++++++++++++++++++
 2 files changed, 61 insertions(+)

diff --git a/sci-chemistry/relion/metadata.xml b/sci-chemistry/relion/metadata.xml
new file mode 100644
index 000000000..8fe354309
--- /dev/null
+++ b/sci-chemistry/relion/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="project">
+		<email>sci-chemistry@g.o</email>
+		<name>Gentoo Chemistry Project</name>
+	</maintainer>
+	<maintainer type="person">
+		<email>alexxy@g.o</email>
+		<name>Alexey Shvetsov</name>
+	</maintainer>
+	<use>
+		<flag name="gui">Enable relion gui</flag>
+		<flag name="cuda">Enable CUDA support</flag>
+	</use>
+</pkgmetadata>

diff --git a/sci-chemistry/relion/relion-3.0.8.ebuild b/sci-chemistry/relion/relion-3.0.8.ebuild
new file mode 100644
index 000000000..34b1277a7
--- /dev/null
+++ b/sci-chemistry/relion/relion-3.0.8.ebuild
@@ -0,0 +1,45 @@
+# Copyright 2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit cmake-utils
+
+DESCRIPTION="Image-processing software for cryo-electron microscopy"
+HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/relion"
+SRC_URI="https://github.com/3dem/relion/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="+gui cuda"
+
+DEPEND="
+		gui? ( x11-libs/fltk )
+		dev-cpp/tbb
+		sci-libs/fftw:3.0
+		media-libs/tiff
+		virtual/mpi
+		cuda? ( dev-util/nvidia-cuda-toolkit )
+		"
+RDEPEND="${DEPEND}"
+BDEPEND="${DEPEND}"
+
+src_prepare() {
+	# hack build type =D
+	sed 's:release:gentoo:g' -i CMakeLists.txt
+	cmake-utils_src_prepare
+}
+
+src_configure() {
+	mycmakeargs=(
+		-DBUILD_SHARED_LIBS=ON
+		-DALTCPU=ON
+		-DFORCE_OWN_FFTW=OFF
+		-DFORCE_OWN_FLTK=OFF
+		-DFORCE_OWN_TBB=OFF
+		-DCUDA=$(usex cuda)
+		-DGUI=$(usex gui)
+	)
+	cmake-utils_src_configure
+}