Gentoo Archives: gentoo-commits

From: Justin Lecher <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: media-gfx/brlcad/, sci-libs/med/, sci-biology/pileup/, sci-biology/trf/, ...
Date: Mon, 25 Jan 2016 08:48:05
Message-Id: 1453490333.215494670034cdd35fefed02a709f18b36b88f64.jlec@gentoo
1 commit: 215494670034cdd35fefed02a709f18b36b88f64
2 Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
3 AuthorDate: Fri Jan 22 19:18:53 2016 +0000
4 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
5 CommitDate: Fri Jan 22 19:18:53 2016 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=21549467
7
8 Fix usage of die with ebuild_helper
9
10 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
11
12 media-gfx/brlcad/brlcad-7.22.0.ebuild | 2 +-
13 media-gfx/brlcad/brlcad-7.24.0.ebuild | 2 +-
14 media-gfx/brlcad/brlcad-7.24.2.ebuild | 2 +-
15 media-gfx/brlcad/brlcad-9999.ebuild | 2 +-
16 sci-biology/apollo/apollo-9999.ebuild | 2 +-
17 sci-biology/consed/consed-29.ebuild | 2 +-
18 sci-biology/pileup/pileup-0.6.ebuild | 4 ++--
19 sci-biology/repeatmasker/repeatmasker-4.0.6-r2.ebuild | 9 +++++----
20 sci-biology/tablet-bin/tablet-bin-1.14.10.21.ebuild | 2 +-
21 sci-biology/trf/trf-4.07b.ebuild | 2 +-
22 sci-libs/med/med-2.3.6.ebuild | 8 ++++----
23 11 files changed, 19 insertions(+), 18 deletions(-)
24
25 diff --git a/media-gfx/brlcad/brlcad-7.22.0.ebuild b/media-gfx/brlcad/brlcad-7.22.0.ebuild
26 index 98fb810..da29102 100644
27 --- a/media-gfx/brlcad/brlcad-7.22.0.ebuild
28 +++ b/media-gfx/brlcad/brlcad-7.22.0.ebuild
29 @@ -105,7 +105,7 @@ src_install() {
30 dodoc AUTHORS NEWS README HACKING TODO BUGS ChangeLog
31 echo "PATH=\"${BRLCAD_DIR}/bin\"" > 99brlcad
32 echo "MANPATH=\"${BRLCAD_DIR}/man\"" >> 99brlcad
33 - doenvd 99brlcad || die
34 + doenvd 99brlcad
35 newicon misc/macosx/Resources/ReadMe.rtfd/brlcad_logo_tiny.png brlcad.png
36 make_desktop_entry mged "BRL-CAD" brlcad "Graphics;Engineering"
37 }
38
39 diff --git a/media-gfx/brlcad/brlcad-7.24.0.ebuild b/media-gfx/brlcad/brlcad-7.24.0.ebuild
40 index 1933ed4..d8781b4 100644
41 --- a/media-gfx/brlcad/brlcad-7.24.0.ebuild
42 +++ b/media-gfx/brlcad/brlcad-7.24.0.ebuild
43 @@ -105,7 +105,7 @@ src_install() {
44 dodoc AUTHORS NEWS README HACKING TODO BUGS ChangeLog
45 echo "PATH=\"${BRLCAD_DIR}/bin\"" > 99brlcad
46 echo "MANPATH=\"${BRLCAD_DIR}/man\"" >> 99brlcad
47 - doenvd 99brlcad || die
48 + doenvd 99brlcad
49 newicon misc/macosx/Resources/ReadMe.rtfd/brlcad_logo_tiny.png brlcad.png
50 make_desktop_entry mged "BRL-CAD" brlcad "Graphics;Engineering"
51 }
52
53 diff --git a/media-gfx/brlcad/brlcad-7.24.2.ebuild b/media-gfx/brlcad/brlcad-7.24.2.ebuild
54 index 09399be..f828e7c 100644
55 --- a/media-gfx/brlcad/brlcad-7.24.2.ebuild
56 +++ b/media-gfx/brlcad/brlcad-7.24.2.ebuild
57 @@ -104,7 +104,7 @@ src_install() {
58 dodoc AUTHORS NEWS README HACKING TODO BUGS ChangeLog
59 echo "PATH=\"${BRLCAD_DIR}/bin\"" > 99brlcad
60 echo "MANPATH=\"${BRLCAD_DIR}/man\"" >> 99brlcad
61 - doenvd 99brlcad || die
62 + doenvd 99brlcad
63 newicon misc/macosx/Resources/ReadMe.rtfd/brlcad_logo_tiny.png brlcad.png
64 make_desktop_entry mged "BRL-CAD" brlcad "Graphics;Engineering"
65 }
66
67 diff --git a/media-gfx/brlcad/brlcad-9999.ebuild b/media-gfx/brlcad/brlcad-9999.ebuild
68 index 06de13d..0ca181c 100644
69 --- a/media-gfx/brlcad/brlcad-9999.ebuild
70 +++ b/media-gfx/brlcad/brlcad-9999.ebuild
71 @@ -100,7 +100,7 @@ src_install() {
72 dodoc AUTHORS NEWS README HACKING TODO BUGS ChangeLog
73 echo "PATH=\"${BRLCAD_DIR}/bin\"" > 99brlcad
74 echo "MANPATH=\"${BRLCAD_DIR}/man\"" >> 99brlcad
75 - doenvd 99brlcad || die
76 + doenvd 99brlcad
77 newicon misc/macosx/Resources/ReadMe.rtfd/brlcad_logo_tiny.png brlcad.png
78 make_desktop_entry mged "BRL-CAD" brlcad "Graphics;Engineering"
79 }
80
81 diff --git a/sci-biology/apollo/apollo-9999.ebuild b/sci-biology/apollo/apollo-9999.ebuild
82 index c00cdcc..b92396a 100644
83 --- a/sci-biology/apollo/apollo-9999.ebuild
84 +++ b/sci-biology/apollo/apollo-9999.ebuild
85 @@ -46,5 +46,5 @@ src_install() {
86 java-pkg_dojar jars/apollo.jar
87
88 echo "PATH=/opt/Apollo" > 99Apollo
89 - doenvd 99Apollo || die
90 + doenvd 99Apollo
91 }
92
93 diff --git a/sci-biology/consed/consed-29.ebuild b/sci-biology/consed/consed-29.ebuild
94 index b814b46..4614477 100644
95 --- a/sci-biology/consed/consed-29.ebuild
96 +++ b/sci-biology/consed/consed-29.ebuild
97 @@ -74,7 +74,7 @@ src_install() {
98 echo 'CONSED_PARAMETERS="${EPREFIX}/etc/consedrc"' >> "${S}"/99consed || die
99 mkdir -p "${ED}"/etc/consedrc || die
100 touch "${ED}"/etc/consedrc || die
101 - doenvd "${S}/99consed" || die
102 + doenvd "${S}/99consed"
103 sed \
104 -e "s#/usr/local/genome#${EPREFIX}/usr#" \
105 -i "${ED}"/usr/bin/{*.perl,phredPhrap,phredPhrapWithPhdBalls} || die
106
107 diff --git a/sci-biology/pileup/pileup-0.6.ebuild b/sci-biology/pileup/pileup-0.6.ebuild
108 index aaa8a56..77322f4 100644
109 --- a/sci-biology/pileup/pileup-0.6.ebuild
110 +++ b/sci-biology/pileup/pileup-0.6.ebuild
111 @@ -48,14 +48,14 @@ src_compile(){
112
113 src_install(){
114 cd ssaha_pileup/ssaha_pileup || die "Cannot cd to "${S}"ssaha_pileup/ssaha_pileup"
115 - dobin ssaha_pileup ssaha_solexa ssaha_pairs ssaha_clean ssaha_mates ssaha_cigar ssaha_indel view_pileup ssaha_reads ssaha_merge ssaha_check-cigar || die "dobin failed"
116 + dobin ssaha_pileup ssaha_solexa ssaha_pairs ssaha_clean ssaha_mates ssaha_cigar ssaha_indel view_pileup ssaha_reads ssaha_merge ssaha_check-cigar "dobin failed"
117
118 cd "${S}" || die
119 for f in ssaha_pileup/other_codes/get_seqreads/get_seqreads \
120 ssaha_pileup/other_codes/ssaha_split/ssaha_split \
121 ssaha_pileup/other_codes/ssaha_parseSNP/ssaha_parseSNP \
122 ssaha_pileup/other_codes/search_read/search_read; do
123 - dobin $f || die "dobin failed"
124 + dobin $f "dobin failed"
125 done
126
127 # TODO:
128
129 diff --git a/sci-biology/repeatmasker/repeatmasker-4.0.6-r2.ebuild b/sci-biology/repeatmasker/repeatmasker-4.0.6-r2.ebuild
130 index 86be5af..18e3e69 100644
131 --- a/sci-biology/repeatmasker/repeatmasker-4.0.6-r2.ebuild
132 +++ b/sci-biology/repeatmasker/repeatmasker-4.0.6-r2.ebuild
133 @@ -68,19 +68,20 @@ Y
134 src_install() {
135 exeinto /usr/share/${PN}
136 for i in DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask; do
137 - doexe $i || die
138 - dosym /usr/share/${PN}/$i /usr/bin/$i || die
139 + doexe $i
140 + dosym /usr/share/${PN}/$i /usr/bin/$i
141 done
142
143 dodir /usr/share/${PN}/lib
144 insinto /usr/share/${PN}/lib
145 doins "${S}"/*.pm "${S}"/Libraries/*.pm
146 - rm -rf "${S}"/Libraries/*.pm # zap the supposedly misplaced RepeatAnnotationData.pm file
147 + # zap the supposedly misplaced RepeatAnnotationData.pm file
148 + rm -rf "${S}"/Libraries/*.pm || die
149
150 # if sci-biology/repeatmasker-libraries is installed prevent file collision
151 # and do NOT install Libraries/RepeatMaskerLib.embl file which contains
152 # a limited version of the file: 20110419-min
153 - rm -rf Libraries/RepeatMaskerLib.embl
154 + rm -rf Libraries/RepeatMaskerLib.embl || die
155 insinto /usr/share/${PN}
156 doins -r util Matrices Libraries *.help
157 keepdir /usr/share/${PN}/Libraries
158
159 diff --git a/sci-biology/tablet-bin/tablet-bin-1.14.10.21.ebuild b/sci-biology/tablet-bin/tablet-bin-1.14.10.21.ebuild
160 index ae4e970..6c0e63a 100644
161 --- a/sci-biology/tablet-bin/tablet-bin-1.14.10.21.ebuild
162 +++ b/sci-biology/tablet-bin/tablet-bin-1.14.10.21.ebuild
163 @@ -93,5 +93,5 @@ src_install() {
164 # python_foreach_impl python_doscript "${WORKDIR}"/coveragestats.py
165
166 echo "PATH=${EPREFIX}/opt/Tablet" > 99Tablet
167 - doenvd 99Tablet || die
168 + doenvd 99Tablet
169 }
170
171 diff --git a/sci-biology/trf/trf-4.07b.ebuild b/sci-biology/trf/trf-4.07b.ebuild
172 index 4d0416a..eed81de 100644
173 --- a/sci-biology/trf/trf-4.07b.ebuild
174 +++ b/sci-biology/trf/trf-4.07b.ebuild
175 @@ -35,7 +35,7 @@ src_install() {
176 dosym /opt/${PN}/${MY_P}.linux.exe /opt/bin/trf
177 # GTK version (http://tandem.bu.edu/trf/downloads/trf400.linuxgtk.exe) has broken linking
178 #if use gtk; then
179 - # doexe trf400.linuxgtk.exe || die
180 + # doexe trf400.linuxgtk.exe
181 # make_desktop_entry /opt/${PN}/trf400.linuxgtk.exe "Tandem Repeats Finder" || die
182 #fi
183 dodoc \
184
185 diff --git a/sci-libs/med/med-2.3.6.ebuild b/sci-libs/med/med-2.3.6.ebuild
186 index edfa5be..d32da0b 100644
187 --- a/sci-libs/med/med-2.3.6.ebuild
188 +++ b/sci-libs/med/med-2.3.6.ebuild
189 @@ -47,18 +47,18 @@ src_install() {
190 exeinto /usr/share/doc/${PF}/examples/c
191 for i in `ls tests/c/*.o` ;
192 do
193 - doexe tests/c/`basename ${i} .o` || die "doexe failed"
194 + doexe tests/c/`basename ${i} .o` "doexe failed"
195 done
196 exeinto /usr/share/doc/${PF}/examples/c/.libs
197 - doexe tests/c/.libs/* || die "doexe failed"
198 + doexe tests/c/.libs/* "doexe failed"
199
200 dodir /usr/share/doc/${PF}/examples/f/.libs
201 exeinto /usr/share/doc/${PF}/examples/f
202 for i in `ls tests/f/*.o` ;
203 do
204 - doexe tests/f/`basename ${i} .o` || die "doexe failed"
205 + doexe tests/f/`basename ${i} .o` "doexe failed"
206 done
207 exeinto /usr/share/doc/${PF}/examples/f/.libs
208 - doexe tests/f/.libs/* || die "doexe failed"
209 + doexe tests/f/.libs/* "doexe failed"
210 fi
211 }