[gentoo-commits] gentoo-x86 commit in sci-chemistry/aria: aria-2.3.2.ebuild metadata.xml ChangeLog aria-2.3.1.ebuild

[Justin Lecher (jlec)]

jlec        11/08/29 15:28:43

  Modified:             metadata.xml ChangeLog aria-2.3.1.ebuild
  Added:                aria-2.3.2.ebuild
  Log:
  Version Bump sci-chemistry/aria-2.3.2, 379153
  
  (Portage version: 2.2.0_alpha51/cvs/Linux x86_64)

Revision  Changes    Path
1.2                  sci-chemistry/aria/metadata.xml

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/metadata.xml?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/metadata.xml?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/metadata.xml?r1=1.1&r2=1.2

Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/aria/metadata.xml,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- metadata.xml	6 Feb 2010 21:50:40 -0000	1.1
+++ metadata.xml	29 Aug 2011 15:28:43 -0000	1.2
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci</herd>
-<maintainer>
-  <email>jlec@g.o</email>
-</maintainer>
+	<herd>sci</herd>
+	<maintainer>
+		<email>jlec@g.o</email>
+	</maintainer>
 </pkgmetadata>



1.8                  sci-chemistry/aria/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/ChangeLog?rev=1.8&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/ChangeLog?rev=1.8&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/ChangeLog?r1=1.7&r2=1.8

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -r1.7 -r1.8
--- ChangeLog	18 Nov 2010 17:10:04 -0000	1.7
+++ ChangeLog	29 Aug 2011 15:28:43 -0000	1.8
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/aria
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.7 2010/11/18 17:10:04 jlec Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.8 2011/08/29 15:28:43 jlec Exp $
+
+*aria-2.3.2 (29 Aug 2011)
+
+  29 Aug 2011; Justin Lecher <jlec@g.o> aria-2.3.1.ebuild,
+  +aria-2.3.2.ebuild, metadata.xml:
+  Version Bump sci-chemistry/aria-2.3.2, 379153
 
   18 Nov 2010; Justin Lecher <jlec@g.o> -files/2.2_p2-numpy.patch,
   -files/2.2_p2-test.patch, -files/sa_ls_cool2.patch, -aria-2.2_p2.ebuild:



1.5                  sci-chemistry/aria/aria-2.3.1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild?rev=1.5&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild?rev=1.5&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild?r1=1.4&r2=1.5

Index: aria-2.3.1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- aria-2.3.1.ebuild	22 Jul 2010 07:08:44 -0000	1.4
+++ aria-2.3.1.ebuild	29 Aug 2011 15:28:43 -0000	1.5
@@ -1,16 +1,17 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.4 2010/07/22 07:08:44 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.5 2011/08/29 15:28:43 jlec Exp $
+
+EAPI=3
 
-EAPI="3"
 PYTHON_DEPEND="2"
 PYTHON_USE_WITH="tk"
 
-inherit base python eutils versionator
+inherit base eutils python versionator
 
 MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
 
-DESCRIPTION="Software for automated NOE assignment and NMR structure calculation."
+DESCRIPTION="Automated NOE assignment and NMR structure calculation"
 HOMEPAGE="http://aria.pasteur.fr/"
 SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.1.tar.gz"
 



1.1                  sci-chemistry/aria/aria-2.3.2.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/aria-2.3.2.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/aria-2.3.2.ebuild?rev=1.1&content-type=text/plain

Index: aria-2.3.2.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2.ebuild,v 1.1 2011/08/29 15:28:43 jlec Exp $

EAPI=3

PYTHON_DEPEND="2"
PYTHON_USE_WITH="tk"

inherit base eutils python versionator

MY_P="${PN}$(get_version_component_range 1-2 ${PV})"

DESCRIPTION="Automated NOE assignment and NMR structure calculation"
HOMEPAGE="http://aria.pasteur.fr/"
SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2.tar.gz"

SLOT="0"
LICENSE="cns"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"

RDEPEND="
	sci-chemistry/clashlist
	sci-chemistry/procheck
	sci-libs/clashscore-db
	dev-python/numpy
	dev-python/matplotlib[tk]
	>=sci-chemistry/cns-1.2.1-r3[aria,openmp]
	>=dev-lang/tk-8.3
	>=sci-chemistry/ccpn-2.0.5
	>=dev-tcltk/tix-8.1.4"
DEPEND="${RDEPEND}"

RESTRICT="fetch"

S="${WORKDIR}/${MY_P}"

pkg_nofetch(){
	einfo "Go to ${HOMEPAGE}, download ${A}"
	einfo "and place it in ${DISTDIR}"
}

src_test(){
	export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir)
	export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
	$(PYTHON) check.py || die
}

src_install(){
	insinto "$(python_get_sitedir)/${PN}"
	doins -r src aria2.py || die "failed to install ${PN}"
	insinto "$(python_get_sitedir)/${PN}"/cns
	doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part"

	if use examples; then
		insinto /usr/share/${P}/
		doins -r examples || die
	fi

	# ENV
	cat >> "${T}"/20aria <<- EOF
	ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}"
	EOF

	doenvd "${T}"/20aria

	# Launch Wrapper
	cat >> "${T}"/aria <<- EOF
	#!/bin/sh
	export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)"
	export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python"
	exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@
	EOF

	dobin "${T}"/aria || die "failed to install wrapper"
	dosym aria /usr/bin/aria2

	dodoc README || die
}

pkg_postinst() {
	python_mod_optimize ${PN}
}

pkg_postrm() {
	python_mod_cleanup ${PN}
}