[gentoo-commits] proj/sci:master commit in: sci-biology/gbench/

[Martin Mokrejs]

commit:     73f28443211e5c078772c8eced7e433746e6ae9c
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Jul 30 12:54:25 2011 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Jul 30 12:54:25 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=73f28443

backbone of a new package, should probably use a lot of stuff from ncbi-tools++ ebuild

(Portage version: 2.1.10.7/git/Linux i686, unsigned Manifest commit)

---
 sci-biology/gbench/ChangeLog           |   11 ++++++
 sci-biology/gbench/gbench-2.3.2.ebuild |   55 ++++++++++++++++++++++++++++++++
 sci-biology/gbench/metadata.xml        |    5 +++
 3 files changed, 71 insertions(+), 0 deletions(-)

diff --git a/sci-biology/gbench/ChangeLog b/sci-biology/gbench/ChangeLog
new file mode 100644
index 0000000..00fb7d5
--- /dev/null
+++ b/sci-biology/gbench/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-biology/gbench
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*gbench-2.3.2 (30 Jul 2011)
+
+  30 Jul 2011; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
+  +gbench-2.3.2.ebuild, +metadata.xml:
+  backbone of a new package, should probably use a lot of stuff from
+  ncbi-tools++ ebuild
+

diff --git a/sci-biology/gbench/gbench-2.3.2.ebuild b/sci-biology/gbench/gbench-2.3.2.ebuild
new file mode 100644
index 0000000..e9bf5b5
--- /dev/null
+++ b/sci-biology/gbench/gbench-2.3.2.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+inherit wxwidgets
+
+DESCRIPTION="View and analyze genome sequences"
+HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/"
+SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-2.3.2/gbench-src-"${PV}".tgz"
+
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS=""
+#KEYWORDS="~amd64 ~x86"
+IUSE="xml ssl sybase-ct zlib lzo pcre gnutls freetds mysql berkdb python opengl glut icu expat sqlite hdf5 jpeg png tiff gif xpm sybase threads fltk cgi"
+
+DEPEND="sys-fs/fuse
+		app-arch/bzip2
+		dev-libs/lzo
+		pcre? ( dev-libs/libpcre )
+		net-libs/gnutls
+		ssl? ( dev-libs/openssl )
+		sybase-ct? ( dev-db/freetds )
+		mysql? ( virtual/mysql )
+		sys-libs/db
+		dev-lang/python
+		dev-libs/boost
+		virtual/opengl
+		virtual/glut
+		media-libs/glew
+		x11-libs/wxGTK
+		dev-libs/icu
+		dev-libs/expat
+		app-text/sablotron
+		xml? ( dev-libs/libxml2 )
+		dev-libs/libxslt
+		sqlite? ( dev-db/sqlite:3 )
+		sci-libs/hdf5
+		media-libs/tiff
+		media-libs/giflib
+		xpm?  ( x11-libs/libXpm
+				virtual/jpeg
+				media-libs/libpng sys-libs/zlib )
+		media-libs/freetype
+		x11-libs/fltk
+		dev-libs/xerces-c
+		dev-libs/xalan-c
+		dev-cpp/muParser
+		dev-util/cppunit"
+
+RDEPEND="${DEPEND}"
+
+# ensure in src_compile no --mandir=/usr/share/man is passed to configure, use the ebuild logic from ncbi-tools++

diff --git a/sci-biology/gbench/metadata.xml b/sci-biology/gbench/metadata.xml
new file mode 100644
index 0000000..d464821
--- /dev/null
+++ b/sci-biology/gbench/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+</pkgmetadata>