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commit: 72d56ebd894309c383e7a1f54b0c13dce2be6d7d |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Fri Jul 29 09:20:54 2016 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Fri Jul 29 09:20:54 2016 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=72d56ebd |
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|
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sci-biology/twinscan: do not install test.pl, keep track of file collision |
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|
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Package-Manager: portage-2.3.0 |
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sci-biology/twinscan/twinscan-4.1.2-r1.ebuild | 7 +++++-- |
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1 file changed, 5 insertions(+), 2 deletions(-) |
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diff --git a/sci-biology/twinscan/twinscan-4.1.2-r1.ebuild b/sci-biology/twinscan/twinscan-4.1.2-r1.ebuild |
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index 469ac63..a4c3258 100644 |
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--- a/sci-biology/twinscan/twinscan-4.1.2-r1.ebuild |
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+++ b/sci-biology/twinscan/twinscan-4.1.2-r1.ebuild |
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@@ -1,4 +1,4 @@ |
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-# Copyright 1999-2015 Gentoo Foundation |
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+# Copyright 1999-2016 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Id$ |
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|
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@@ -7,7 +7,7 @@ EAPI=5 |
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PERL_EXPORT_PHASE_FUNCTIONS=no |
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inherit perl-module eutils toolchain-funcs |
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|
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-DESCRIPTION="iscan (aka twinscan and N-SCAN) and wrapper around Pairagon: A gene structure prediction pipeline" |
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+DESCRIPTION="iscan (aka twinscan and N-SCAN), Pairagon wrapper: Gene structure pred. pipeline" |
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HOMEPAGE="http://mblab.wustl.edu/software/twinscan" |
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SRC_URI="http://mblab.wustl.edu/software/download/iscan-${PV}.tar_.gz -> ${P}.tar.gz" |
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|
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@@ -39,6 +39,9 @@ src_prepare() { |
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} |
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src_install() { |
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+ # TODO: prevent file collision with media-gfx/iscan by renaming iscan to iscan_twinscan |
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+ # also fix a Genscan++ToZoe.pl Nscan_driver.pl runTwinscan2.pl run_iscan.pl run_iscan_cons.pl run_iscan_cons_list.pl test.pl |
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+ rm bin/test.pl || die |
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dobin bin/iscan bin/zoe2gtf bin/*.pl src/*.pl |
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dolib lib/libzoe.a |
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insinto /usr/share/${PN} |
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