Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ensembl-tools/
Date: Mon, 01 Aug 2016 12:44:12
Message-Id: 1470055389.51323d9c686f7a9bd5ec8b04d003353f8829e520.mmokrejs@gentoo
1 commit: 51323d9c686f7a9bd5ec8b04d003353f8829e520
2 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
3 AuthorDate: Mon Aug 1 12:43:09 2016 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Mon Aug 1 12:43:09 2016 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=51323d9c
7
8 sci-biology/ensembl-tools: add more dependencies
9
10 Package-Manager: portage-2.3.0
11
12 sci-biology/ensembl-tools/ensembl-tools-85.ebuild | 6 ++++--
13 1 file changed, 4 insertions(+), 2 deletions(-)
14
15 diff --git a/sci-biology/ensembl-tools/ensembl-tools-85.ebuild b/sci-biology/ensembl-tools/ensembl-tools-85.ebuild
16 index 0ed40bb..ffa1b63 100644
17 --- a/sci-biology/ensembl-tools/ensembl-tools-85.ebuild
18 +++ b/sci-biology/ensembl-tools/ensembl-tools-85.ebuild
19 @@ -17,7 +17,8 @@ SLOT="0"
20 KEYWORDS="" # BUG: needs Bio::EnsEMBL::Registry
21 IUSE=""
22
23 -DEPEND=""
24 +DEPEND="dev-perl/File-Copy-Recursive
25 + dev-perl/Archive-Extract"
26 #DEPEND="dev-perl/Perl-XS
27 # dev-perl/Bio-DB-HTS"
28 RDEPEND="${DEPEND}"
29 @@ -28,7 +29,8 @@ src_install(){
30 perl_set_version
31 insinto ${VENDOR_LIB}/${PN}
32 cd scripts/variant_effect_predictor || die
33 - perl INSTALL.pl --DESTDIR="${EPREFIX}"/"${DESTDIR}" --AUTO ac
34 + # FIXME: INSTALL.pl does not exit upon error
35 + ./INSTALL.pl --DESTDIR="${DESTDIR}"/"${EPREFIX}" --AUTO=ac || die
36 newdoc README.txt variant_effect_predictor.txt
37 cd ../../scripts/region_reporter || die
38 dobin *.pl