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commit: e13c803fe9c9c8917720bf5d2e499bc2086c07b3 |
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Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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AuthorDate: Sat Oct 27 12:32:32 2018 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Sat Oct 27 12:32:32 2018 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e13c803f |
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|
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Drop broken package |
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|
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Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
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|
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sci-biology/gbench/gbench-2.11.7.ebuild | 89 --------------------------------- |
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sci-biology/gbench/metadata.xml | 8 --- |
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2 files changed, 97 deletions(-) |
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|
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diff --git a/sci-biology/gbench/gbench-2.11.7.ebuild b/sci-biology/gbench/gbench-2.11.7.ebuild |
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deleted file mode 100644 |
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index 58631ce43..000000000 |
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--- a/sci-biology/gbench/gbench-2.11.7.ebuild |
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+++ /dev/null |
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@@ -1,89 +0,0 @@ |
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-# Copyright 1999-2017 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=5 |
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- |
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-PYTHON_COMPAT=( python2_7 ) |
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- |
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-inherit python-single-r1 wxwidgets |
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- |
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-DESCRIPTION="View and analyze genome sequences" |
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-HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/" |
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-SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-"${PV}"/gbench-src-"${PV}".tgz" |
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- |
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-LICENSE="public-domain" |
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-SLOT="0" |
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-KEYWORDS="" |
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-#KEYWORDS="~amd64 ~x86" |
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-IUSE="xml ssl sybase-ct zlib lzo pcre gnutls freetds mysql berkdb python opengl glut icu expat sqlite hdf5 jpeg png tiff gif xpm sybase threads fltk cgi" |
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- |
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-REQUIRED_USE="${PYTHON_REQUIRED_USE}" |
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- |
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-RDEPEND="${PYTHON_DEPS} |
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- app-arch/bzip2 |
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- app-text/sablotron |
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- dev-cpp/muParser |
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- dev-libs/boost:= |
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- dev-libs/expat |
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- dev-libs/icu |
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- dev-libs/libxslt |
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- lzo? ( dev-libs/lzo ) |
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- dev-libs/xalan-c |
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- dev-libs/xerces-c |
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- dev-util/cppunit |
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- media-libs/freetype |
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- media-libs/giflib |
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- media-libs/tiff:0= |
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- || ( sci-biology/ncbi-tools++ sci-biology/sra_sdk ) |
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- gnutls? ( net-libs/gnutls ) |
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- hdf5? ( sci-libs/hdf5 ) |
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- sys-fs/fuse:= |
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- berkdb? ( >=sys-libs/db-4.3:* ) |
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- glut? ( virtual/glu ) |
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- opengl? ( virtual/opengl |
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- media-libs/ftgl |
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- media-libs/glew:= ) |
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- x11-libs/fltk |
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- >=x11-libs/gtk+-2:* |
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- x11-libs/wxGTK:* |
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- mysql? ( virtual/mysql ) |
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- pcre? ( dev-libs/libpcre ) |
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- sqlite? ( dev-db/sqlite:3= ) |
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- ssl? ( dev-libs/openssl:0= ) |
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- sybase-ct? ( dev-db/freetds ) |
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- xml? ( dev-libs/libxml2:2= ) |
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- xpm? ( |
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- x11-libs/libXpm |
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- virtual/jpeg:0= |
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- media-libs/libpng:0= |
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- sys-libs/zlib |
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- ) |
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-" |
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-DEPEND="${RDEPEND}" |
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- |
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-# recycle ebuild logic from ncbi-tools++ |
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- |
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-S="${WORKDIR}"/gbench-src-"${PV}" |
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- |
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-src_configure(){ |
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- # configure: error: --mandir=/usr/share/man: unknown option; use --help to show usage |
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- # configure: error: --infodir=/usr/share/info: unknown option; use --help to show usage |
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- # configure: error: --datadir=/usr/share: unknown option; use --help to show usage |
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- # configure: error: --sysconfdir=/etc: unknown option; use --help to show usage |
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- # configure: error: --localstatedir=/var/lib: unknown option; use --help to show usage |
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- ./configure --prefix="${DESTDIR}"/"${EPREFIX}/usr" --libdir="${EPREFIX}/usr/$(get_libdir)" \ |
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- --without-downloaded-vdb \ |
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- CC="$(tc-getCC)" CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" || die |
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-} |
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- |
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-# Doh, it runs git during configure phase if it could not find NCBI SRA VDB |
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-# by executing ./scripts/common/add_vdb.sh which points to https://github.com/ncbi/ncbi-vdb |
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-# But, we already have sci-biology/sra_sdk which blocks sci-biology/ncbi-tools++ |
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-# as some files overlap. Seems ncbi-vdb is yet another smaller subset of either |
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-# of the two? |
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-# |
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-# Same come checking out ncbi-vdb should be in ncbi-tools++-18.0.0 . |
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-# |
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-# That behavior is entirely optional; you can suppress it by |
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-# configuring the Toolkit --without-downloaded-vdb, --with-vdb=PATH (e.g., |
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-# --with-vdb=/usr), or --without-vdb altogether. |
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|
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diff --git a/sci-biology/gbench/metadata.xml b/sci-biology/gbench/metadata.xml |
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deleted file mode 100644 |
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index 8417d1580..000000000 |
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--- a/sci-biology/gbench/metadata.xml |
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+++ /dev/null |
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@@ -1,8 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <maintainer type="project"> |
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- <email>sci-biology@g.o</email> |
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- <name>Gentoo Biology Project</name> |
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- </maintainer> |
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-</pkgmetadata> |