| 1 |
jlec 15/03/29 13:39:24 |
| 2 |
|
| 3 |
Modified: metadata.xml wise-2.4.0_alpha.ebuild ChangeLog |
| 4 |
Log: |
| 5 |
Bump to EAPI=5 |
| 6 |
|
| 7 |
(Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!) |
| 8 |
|
| 9 |
Revision Changes Path |
| 10 |
1.4 sci-biology/wise/metadata.xml |
| 11 |
|
| 12 |
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/metadata.xml?rev=1.4&view=markup |
| 13 |
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/metadata.xml?rev=1.4&content-type=text/plain |
| 14 |
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/metadata.xml?r1=1.3&r2=1.4 |
| 15 |
|
| 16 |
Index: metadata.xml |
| 17 |
=================================================================== |
| 18 |
RCS file: /var/cvsroot/gentoo-x86/sci-biology/wise/metadata.xml,v |
| 19 |
retrieving revision 1.3 |
| 20 |
retrieving revision 1.4 |
| 21 |
diff -u -r1.3 -r1.4 |
| 22 |
--- metadata.xml 14 Sep 2006 02:21:22 -0000 1.3 |
| 23 |
+++ metadata.xml 29 Mar 2015 13:39:24 -0000 1.4 |
| 24 |
@@ -1,5 +1,5 @@ |
| 25 |
<?xml version="1.0" encoding="UTF-8"?> |
| 26 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 27 |
<pkgmetadata> |
| 28 |
- <herd>sci-biology</herd> |
| 29 |
+ <herd>sci-biology</herd> |
| 30 |
</pkgmetadata> |
| 31 |
|
| 32 |
|
| 33 |
|
| 34 |
1.3 sci-biology/wise/wise-2.4.0_alpha.ebuild |
| 35 |
|
| 36 |
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild?rev=1.3&view=markup |
| 37 |
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild?rev=1.3&content-type=text/plain |
| 38 |
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild?r1=1.2&r2=1.3 |
| 39 |
|
| 40 |
Index: wise-2.4.0_alpha.ebuild |
| 41 |
=================================================================== |
| 42 |
RCS file: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild,v |
| 43 |
retrieving revision 1.2 |
| 44 |
retrieving revision 1.3 |
| 45 |
diff -u -r1.2 -r1.3 |
| 46 |
--- wise-2.4.0_alpha.ebuild 2 Oct 2010 15:08:42 -0000 1.2 |
| 47 |
+++ wise-2.4.0_alpha.ebuild 29 Mar 2015 13:39:24 -0000 1.3 |
| 48 |
@@ -1,8 +1,8 @@ |
| 49 |
-# Copyright 1999-2010 Gentoo Foundation |
| 50 |
+# Copyright 1999-2015 Gentoo Foundation |
| 51 |
# Distributed under the terms of the GNU General Public License v2 |
| 52 |
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild,v 1.2 2010/10/02 15:08:42 dilfridge Exp $ |
| 53 |
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild,v 1.3 2015/03/29 13:39:24 jlec Exp $ |
| 54 |
|
| 55 |
-EAPI="3" |
| 56 |
+EAPI=5 |
| 57 |
|
| 58 |
inherit eutils toolchain-funcs versionator |
| 59 |
|
| 60 |
@@ -12,8 +12,8 @@ |
| 61 |
|
| 62 |
LICENSE="BSD" |
| 63 |
SLOT="0" |
| 64 |
-IUSE="doc" |
| 65 |
KEYWORDS="~alpha ~amd64 ~ia64 ~sparc ~x86" |
| 66 |
+IUSE="doc static-libs" |
| 67 |
|
| 68 |
RDEPEND="~sci-biology/hmmer-2.3.2" |
| 69 |
DEPEND=" |
| 70 |
@@ -25,11 +25,12 @@ |
| 71 |
S="${WORKDIR}"/${PN}$(delete_version_separator 3) |
| 72 |
|
| 73 |
src_prepare() { |
| 74 |
- epatch "${FILESDIR}"/${P}-glibc-2.10.patch |
| 75 |
- epatch "${FILESDIR}"/${P}-cflags.patch |
| 76 |
- cd "${S}"/docs |
| 77 |
- cat "${S}"/src/models/*.tex "${S}"/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex |
| 78 |
- cat wise2api.tex temp.tex apiend.tex > api.tex |
| 79 |
+ epatch \ |
| 80 |
+ "${FILESDIR}"/${P}-glibc-2.10.patch \ |
| 81 |
+ "${FILESDIR}"/${P}-cflags.patch |
| 82 |
+ cd "${S}"/docs || die |
| 83 |
+ cat "${S}"/src/models/*.tex "${S}"/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex || die |
| 84 |
+ cat wise2api.tex temp.tex apiend.tex > api.tex || die |
| 85 |
epatch "${FILESDIR}"/${PN}-api.tex.patch |
| 86 |
} |
| 87 |
|
| 88 |
@@ -37,9 +38,9 @@ |
| 89 |
emake \ |
| 90 |
-C src \ |
| 91 |
CC="$(tc-getCC)" \ |
| 92 |
- all || die |
| 93 |
+ all |
| 94 |
if use doc; then |
| 95 |
- cd "${S}"/docs |
| 96 |
+ cd "${S}"/docs || die |
| 97 |
for i in api appendix dynamite wise2 wise3arch; do |
| 98 |
latex ${i} || die |
| 99 |
latex ${i} || die |
| 100 |
@@ -49,21 +50,24 @@ |
| 101 |
} |
| 102 |
|
| 103 |
src_test() { |
| 104 |
- cd "${S}"/src |
| 105 |
- WISECONFIGDIR="${S}/wisecfg" make test || die |
| 106 |
+ cd "${S}"/src || die |
| 107 |
+ WISECONFIGDIR="${S}/wisecfg" emake test |
| 108 |
} |
| 109 |
|
| 110 |
src_install() { |
| 111 |
- dobin "${S}"/src/bin/* || die "Failed to install program" |
| 112 |
- dolib.a "${S}"/src/base/libwisebase.a || die "Failed to install libwisebase" |
| 113 |
- dolib.a "${S}"/src/dynlibsrc/libdyna.a || die "Failed to install libdyna" |
| 114 |
- dobin "${S}"/src/dynlibsrc/testgendb || die "Failed to install testgendb" |
| 115 |
- dolib.a "${S}"/src/models/libmodel.a || die "Failed to install libmodel" |
| 116 |
+ dobin "${S}"/src/bin/* "${S}"/src/dynlibsrc/testgendb |
| 117 |
+ use static-libs && \ |
| 118 |
+ dolib.a \ |
| 119 |
+ "${S}"/src/base/libwisebase.a \ |
| 120 |
+ "${S}"/src/dynlibsrc/libdyna.a \ |
| 121 |
+ "${S}"/src/models/libmodel.a |
| 122 |
+ |
| 123 |
insinto /usr/share/${PN} |
| 124 |
- doins -r "${S}"/wisecfg || die "Failed to install wisecfg" |
| 125 |
+ doins -r "${S}"/wisecfg |
| 126 |
+ |
| 127 |
if use doc; then |
| 128 |
insinto /usr/share/doc/${PF} |
| 129 |
- doins "${S}"/docs/*.ps || die "Failed to install documentation" |
| 130 |
+ doins "${S}"/docs/*.ps |
| 131 |
fi |
| 132 |
newenvd "${FILESDIR}"/${PN}-env 24wise || die "Failed to install env file" |
| 133 |
} |
| 134 |
|
| 135 |
|
| 136 |
|
| 137 |
1.17 sci-biology/wise/ChangeLog |
| 138 |
|
| 139 |
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/ChangeLog?rev=1.17&view=markup |
| 140 |
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/ChangeLog?rev=1.17&content-type=text/plain |
| 141 |
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/ChangeLog?r1=1.16&r2=1.17 |
| 142 |
|
| 143 |
Index: ChangeLog |
| 144 |
=================================================================== |
| 145 |
RCS file: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v |
| 146 |
retrieving revision 1.16 |
| 147 |
retrieving revision 1.17 |
| 148 |
diff -u -r1.16 -r1.17 |
| 149 |
--- ChangeLog 2 Oct 2010 15:08:42 -0000 1.16 |
| 150 |
+++ ChangeLog 29 Mar 2015 13:39:24 -0000 1.17 |
| 151 |
@@ -1,6 +1,10 @@ |
| 152 |
# ChangeLog for sci-biology/wise |
| 153 |
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
| 154 |
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v 1.16 2010/10/02 15:08:42 dilfridge Exp $ |
| 155 |
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
| 156 |
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v 1.17 2015/03/29 13:39:24 jlec Exp $ |
| 157 |
+ |
| 158 |
+ 29 Mar 2015; Justin Lecher <jlec@g.o> metadata.xml, |
| 159 |
+ wise-2.4.0_alpha.ebuild: |
| 160 |
+ Bump to EAPI=5 |
| 161 |
|
| 162 |
02 Oct 2010; Andreas K. Huettel <dilfridge@g.o> wise-2.2.0.ebuild, |
| 163 |
wise-2.4.0_alpha.ebuild: |
| 164 |
@@ -65,4 +69,3 @@ |
| 165 |
06 Mar 2005; Olivier Fisette <ribosome@g.o> +metadata.xml, |
| 166 |
+files/wise-api.tex.patch, +files/wise-env, +wise-2.2.0.ebuild: |
| 167 |
Initial import. |
| 168 |
- |
Archives