[gentoo-commits] gentoo-x86 commit in sci-biology/bwa: ChangeLog bwa-0.5.8a.ebuild

[Andrey Kislyuk (weaver)]

weaver      10/10/09 20:15:55

  Modified:             ChangeLog
  Added:                bwa-0.5.8a.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2_rc86/cvs/Linux x86_64)

Revision  Changes    Path
1.9                  sci-biology/bwa/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.9&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.9&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?r1=1.8&r2=1.9

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -r1.8 -r1.9
--- ChangeLog	7 Sep 2010 11:51:10 -0000	1.8
+++ ChangeLog	9 Oct 2010 20:15:55 -0000	1.9
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/bwa
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.8 2010/09/07 11:51:10 xarthisius Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.9 2010/10/09 20:15:55 weaver Exp $
+
+*bwa-0.5.8a (09 Oct 2010)
+
+  09 Oct 2010; Andrey Kislyuk <weaver@g.o> +bwa-0.5.8a.ebuild:
+  Version bump
 
 *bwa-0.5.0-r1 (07 Sep 2010)
 



1.1                  sci-biology/bwa/bwa-0.5.8a.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.5.8a.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.5.8a.ebuild?rev=1.1&content-type=text/plain

Index: bwa-0.5.8a.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.5.8a.ebuild,v 1.1 2010/10/09 20:15:55 weaver Exp $

EAPI=2

inherit flag-o-matic toolchain-funcs

DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
HOMEPAGE="http://bio-bwa.sourceforge.net/"
SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"

LICENSE="GPL-3"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86 ~x64-macos"

src_prepare() {
	sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \
		-i "${S}"/Makefile || die #336348
	append-flags -pthread
}

src_compile() {
	emake -e CC="$(tc-getCC)" || die
}

src_install() {
	dobin bwa || die
	doman bwa.1 || die
	exeinto /usr/share/${PN}
	doexe solid2fastq.pl || die
	doexe qualfa2fq.pl || die
	dodoc ChangeLog NEWS || die
}