[gentoo-commits] gentoo-x86 commit in sci-biology/t-coffee: ChangeLog t-coffee-6.82.ebuild t-coffee-4.96.ebuild t-coffee-5.05.ebuild

[Markus Dittrich (markusle)]

markusle    08/09/06 11:30:00

  Modified:             ChangeLog
  Added:                t-coffee-6.82.ebuild
  Removed:              t-coffee-4.96.ebuild t-coffee-5.05.ebuild
  Log:
  Version bump and removed old ebuilds (fixes bug #232323). According to the website and docs, t-coffee is now released under the GPL-2, hence changed the license info and uploaded the tarball to our mirrors.
  (Portage version: 2.2_rc8/cvs/Linux 2.6.26-SENTINEL-2 i686)

Revision  Changes    Path
1.34                 sci-biology/t-coffee/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.34&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.34&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?r1=1.33&r2=1.34

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v
retrieving revision 1.33
retrieving revision 1.34
diff -u -r1.33 -r1.34
--- ChangeLog	14 Jul 2008 17:01:42 -0000	1.33
+++ ChangeLog	6 Sep 2008 11:29:59 -0000	1.34
@@ -1,6 +1,15 @@
 # ChangeLog for sci-biology/t-coffee
 # Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.33 2008/07/14 17:01:42 nixnut Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.34 2008/09/06 11:29:59 markusle Exp $
+
+*t-coffee-6.82 (06 Sep 2008)
+
+  06 Sep 2008; Markus Dittrich <markusle@g.o> -t-coffee-4.96.ebuild,
+  -t-coffee-5.05.ebuild, +t-coffee-6.82.ebuild:
+  Version bump and removed old ebuilds (fixes bug #232323). According 
+  to the website and docs, t-coffee is now released under the GPL-2,
+  hence changed the license info and uploaded the tarball to our
+  mirrors.
 
   14 Jul 2008; nixnut <nixnut@g.o> t-coffee-5.65.ebuild:
   Stable on ppc wrt bug 221165



1.1                  sci-biology/t-coffee/t-coffee-6.82.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-6.82.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-6.82.ebuild?rev=1.1&content-type=text/plain

Index: t-coffee-6.82.ebuild
===================================================================
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-6.82.ebuild,v 1.1 2008/09/06 11:29:59 markusle Exp $

inherit toolchain-funcs flag-o-matic

DESCRIPTION="A multiple sequence alignment package"
LICENSE="GPL-2"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"

SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~ppc ~x86"

DEPEND="sci-biology/clustalw"

TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
S="${TCDIR}/t_coffee_source"

die_compile() {
	echo
	eerror "If you experience an internal compiler error (consult the above"
	eerror "messages), try compiling t-coffee using very modest compiler flags."
	eerror "See bug #114745 on the Gentoo Bugzilla for more details."
	die "Compilation failed"
}

src_compile() {
	[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
	[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
	CC="$(tc-getCC)" CFLAGS="${CFLAGS}" emake || die_compile
}

src_install() {
	dobin t_coffee || die "Failed to install program."

	insinto /usr/share/${PN}/lib/html
	doins "${TCDIR}"/html/* \
		|| die "Failed to install Web interface files."

	cd "${TCDIR}"/doc
	dodoc aln_compare.doc.txt seq_reformat.doc.txt \
			t_coffee_technical.txt t_coffee_tutorial.txt \
			|| die "Failed to install text documentation."

	dohtml t_coffee_technical.htm t_coffee_tutorial.htm \
		|| die "Failed to install HTML documentation."

	insinto /usr/share/doc/${PF}
	doins t_coffee_technical.doc t_coffee_tutorial.doc \
		|| die "Failed to install DOC documentation."

	insinto /usr/share/${PN}/example
	doins "${TCDIR}"/example/* \
		|| die "Failed to install example files."
}